Variant report

Variant	rs1550003
Chromosome Location	chr9:8798767-8798768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12336092	1.00[JPT][hapmap]
rs58186507	1.00[EUR][1000 genomes]
rs58422526	1.00[EUR][1000 genomes]
rs59819097	1.00[EUR][1000 genomes]
rs73427076	1.00[EUR][1000 genomes]
rs892501	1.00[EUR][1000 genomes]
rs892502	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv892239	chr9:8773599-8805462	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
8	nsv466124	chr9:8787733-8800078	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
9	nsv613298	chr9:8787733-8800078	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
10	nsv892240	chr9:8796449-8834108	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8786200-8799000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr9:8786200-8799400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:8786400-8799400	Weak transcription	Fetal Kidney	kidney
4	chr9:8794200-8799400	Weak transcription	Fetal Lung	lung
5	chr9:8794200-8821800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:8794400-8799200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:8794800-8799800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr9:8794800-8825600	Weak transcription	Ovary	ovary
9	chr9:8797200-8800000	Enhancers	Brain Cingulate Gyrus	brain
10	chr9:8797600-8798800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:8797600-8800600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:8797800-8798800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:8797800-8799000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr9:8797800-8799200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:8798200-8799000	Weak transcription	Brain Anterior Caudate	brain
16	chr9:8798200-8799800	Enhancers	Brain Substantia Nigra	brain
17	chr9:8798400-8800200	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr9:8798400-8800800	Enhancers	Brain Angular Gyrus	brain
19	chr9:8798400-8815400	Weak transcription	Fetal Brain Male	brain
20	chr9:8798600-8798800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr9:8798600-8799800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr9:8798600-8799800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr9:8798600-8800000	Weak transcription	Fetal Heart	heart
24	chr9:8798600-8800200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:8798600-8800600	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr9:8798600-8800600	Enhancers	Brain Hippocampus Middle	brain
27	chr9:8798600-8800800	Enhancers	HUES6 Cell Line	embryonic stem cell

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