Variant report

Variant	rs1550601
Chromosome Location	chr4:78335246-78335247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10020156	0.95[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs11721695	0.82[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap]
rs11726795	0.84[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap]
rs11940899	0.95[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs4605685	0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs4859496	0.84[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap]
rs4859837	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs4859841	0.95[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.80[ASN][1000 genomes]
rs894432	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs894435	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs894440	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829974	chr4:78240718-78415642	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78333400-78336000	Enhancers	Fetal Muscle Leg	muscle
2	chr4:78334200-78336200	Enhancers	Fetal Stomach	stomach
3	chr4:78334400-78335800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:78334800-78335600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:78334800-78335800	Enhancers	Fetal Lung	lung
6	chr4:78335000-78335600	Enhancers	Fetal Kidney	kidney
7	chr4:78335000-78336000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:78335200-78335600	Bivalent Enhancer	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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