Variant report

Variant	rs1551891
Chromosome Location	chr19:45231821-45231822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:45222394..45233722-chr19:45248498..45258065,33	MCF-7	breast:
2	chr19:45225977..45229146-chr19:45231463..45233615,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069399	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1531517	0.94[ASN][1000 genomes]
rs62117161	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62117162	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62117204	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912116	chr19:45146103-45298069	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv833841	chr19:45208486-45308043	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	esv3335183	chr19:45225161-45253316	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45226000-45232400	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr19:45229000-45232400	Enhancers	HepG2	liver
3	chr19:45229000-45240800	Weak transcription	Right Atrium	heart
4	chr19:45229200-45233000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr19:45229200-45238000	Weak transcription	Esophagus	oesophagus
6	chr19:45229200-45240800	Weak transcription	Spleen	Spleen
7	chr19:45229800-45234200	Weak transcription	Colonic Mucosa	Colon
8	chr19:45230000-45235200	Weak transcription	Stomach Mucosa	stomach
9	chr19:45230800-45232000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr19:45231000-45232000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr19:45231000-45232000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr19:45231000-45232000	Enhancers	Fetal Muscle Trunk	muscle
13	chr19:45231000-45232200	Enhancers	Primary hematopoietic stem cells	blood
14	chr19:45231000-45232400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:45231000-45233000	Enhancers	GM12878-XiMat	blood
16	chr19:45231000-45233200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr19:45231000-45233600	Enhancers	Primary B cells from peripheral blood	blood
18	chr19:45231200-45235600	Weak transcription	Fetal Thymus	thymus
19	chr19:45231400-45232400	Enhancers	A549	lung
20	chr19:45231400-45234800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr19:45231400-45234800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr19:45231400-45238400	Weak transcription	Small Intestine	intestine
23	chr19:45231400-45240600	Weak transcription	Lung	lung
24	chr19:45231600-45235400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr19:45231800-45232400	Weak transcription	Primary B cells from cord blood	blood
26	chr19:45231800-45235400	Weak transcription	Monocytes-CD14+_RO01746	blood

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