Variant report

Variant	rs1551938
Chromosome Location	chr5:58425496-58425497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:58416156..58418689-chr5:58423401..58425784,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1105577	0.91[CEU][hapmap];0.82[CHB][hapmap];0.85[GIH][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes]
rs16889280	0.91[CEU][hapmap];0.82[CHB][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs3901540	0.87[CEU][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes]
rs6877743	0.82[CHB][hapmap]
rs72764072	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58423200-58426400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:58423800-58429400	Weak transcription	Aorta	Aorta
3	chr5:58424000-58425600	Enhancers	Colon Smooth Muscle	Colon
4	chr5:58424000-58425800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr5:58424000-58426400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr5:58424000-58426400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:58424000-58427200	Enhancers	Hela-S3	cervix
8	chr5:58424000-58439800	Weak transcription	Small Intestine	intestine
9	chr5:58424000-58447000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:58424200-58426000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:58424200-58427200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:58424200-58427400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr5:58424200-58429400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:58424200-58429400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:58424200-58429400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:58424200-58429400	Weak transcription	Left Ventricle	heart
17	chr5:58424200-58429400	Weak transcription	Psoas Muscle	Psoas
18	chr5:58424200-58429400	Weak transcription	HMEC	breast
19	chr5:58424200-58432800	Weak transcription	Right Ventricle	heart
20	chr5:58424200-58446200	Weak transcription	Fetal Intestine Large	intestine
21	chr5:58424200-58446600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr5:58424400-58425800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr5:58424400-58426000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr5:58424400-58427200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:58424400-58427600	Enhancers	Fetal Heart	heart
26	chr5:58424400-58430200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr5:58424400-58431400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr5:58424600-58426800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr5:58424600-58427400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr5:58424600-58429400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:58424600-58429600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr5:58424800-58426000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr5:58424800-58427400	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr5:58424800-58428000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr5:58424800-58428400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr5:58424800-58428600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr5:58424800-58429000	Weak transcription	NHDF-Ad	bronchial
38	chr5:58424800-58429400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr5:58424800-58429400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr5:58424800-58429400	Weak transcription	Right Atrium	heart
41	chr5:58424800-58429600	Weak transcription	HSMM	muscle
42	chr5:58425000-58426000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr5:58425000-58426000	Enhancers	A549	lung
44	chr5:58425000-58426800	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr5:58425000-58427600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr5:58425000-58429600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr5:58425000-58429600	Weak transcription	Osteobl	bone
48	chr5:58425200-58426200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr5:58425200-58426800	Weak transcription	Primary T cells from cord blood	blood
50	chr5:58425200-58427400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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