Variant report

Variant	rs1552672
Chromosome Location	chr3:56432796-56432797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2873304	0.91[EUR][1000 genomes]
rs4591474	0.86[EUR][1000 genomes]
rs4974207	0.86[EUR][1000 genomes]
rs6801157	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876816	chr3:56422771-56457705	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56424000-56447400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:56428200-56433200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:56431600-56433000	Weak transcription	Ovary	ovary
4	chr3:56432600-56433000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:56432600-56433400	Enhancers	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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