Variant report

Variant	rs1552896
Chromosome Location	chr9:14841387-14841388
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1021493	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs1021494	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs1021495	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1027347	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1353224	0.88[EUR][1000 genomes]
rs2642404	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2818941	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs62537679	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029491	chr9:14033607-14942373	Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv915804	chr9:14182608-14903050	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv613637	chr9:14524438-15011915	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv831518	chr9:14760638-14953501	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1030626	chr9:14786215-14853681	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv540071	chr9:14786215-14853681	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv892617	chr9:14791348-14889834	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv613646	chr9:14800779-14852141	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv1031440	chr9:14805107-14859190	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv540072	chr9:14805107-14859190	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv892618	chr9:14811971-14844777	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv892619	chr9:14821819-14866389	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:14779800-14853200	Weak transcription	Placenta	Placenta
2	chr9:14780400-14843200	Weak transcription	Fetal Heart	heart
3	chr9:14801800-14857200	Strong transcription	HepG2	liver
4	chr9:14807400-14868600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:14809200-14847600	Weak transcription	Fetal Intestine Small	intestine
6	chr9:14810400-14849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:14814200-14842200	Weak transcription	Pancreas	Pancrea
8	chr9:14823400-14848400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr9:14824000-14852800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr9:14825000-14841400	Weak transcription	Fetal Intestine Large	intestine
11	chr9:14826000-14849600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:14831000-14842200	Weak transcription	Aorta	Aorta
13	chr9:14832000-14842000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr9:14832000-14843000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:14832800-14842400	Weak transcription	Fetal Muscle Leg	muscle
16	chr9:14833400-14842000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:14833400-14842200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:14833400-14842400	Weak transcription	Fetal Stomach	stomach
19	chr9:14833400-14860600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:14834600-14841800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:14837400-14846800	Strong transcription	Fetal Lung	lung
22	chr9:14838600-14854000	Strong transcription	Fetal Kidney	kidney
23	chr9:14840000-14843200	Strong transcription	Adipose Nuclei	Adipose
24	chr9:14840000-14846000	Strong transcription	Colon Smooth Muscle	Colon
25	chr9:14840600-14851400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:14841200-14843600	Weak transcription	Brain Inferior Temporal Lobe	brain

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