Variant report

Variant	rs1553459
Chromosome Location	chr1:160544973-160544974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160539248..160543409-chr1:160544798..160548028,5	K562	blood:
2	chr1:160536235..160543058-chr1:160543478..160548021,8	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1570707	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737791	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3766386	1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs41266913	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6427538	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665409	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73014378	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73016361	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73016371	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73016376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7517554	1.00[CHB][hapmap];0.82[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829614	chr1:160465291-160595000	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv872491	chr1:160470258-160580549	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831703	chr1:160496124-160643024	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160535400-160547600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:160536000-160547000	Weak transcription	Adipose Nuclei	Adipose
3	chr1:160538200-160545400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr1:160538200-160546000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr1:160539000-160546800	Enhancers	Thymus	Thymus
6	chr1:160542400-160548000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:160542800-160545000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:160542800-160548200	Enhancers	Fetal Thymus	thymus
9	chr1:160543000-160548600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr1:160543200-160546400	Enhancers	Primary T cells from cord blood	blood
11	chr1:160543200-160547000	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:160543400-160548400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr1:160543600-160545600	Weak transcription	Spleen	Spleen
14	chr1:160544200-160545000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr1:160544200-160545000	Enhancers	Duodenum Mucosa	Duodenum
16	chr1:160544200-160545200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr1:160544200-160545200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:160544200-160545800	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr1:160544200-160548400	Flanking Active TSS	GM12878-XiMat	blood
20	chr1:160544400-160546400	Weak transcription	Dnd41	blood
21	chr1:160544400-160547200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:160544400-160547800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr1:160544400-160548000	Enhancers	K562	blood
24	chr1:160544600-160545200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr1:160544600-160546400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr1:160544600-160548000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
27	chr1:160544600-160548000	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr1:160544800-160545000	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr1:160544800-160545200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr1:160544800-160545400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
31	chr1:160544800-160545400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr1:160544800-160545800	Flanking Active TSS	Primary B cells from cord blood	blood
33	chr1:160544800-160546400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr1:160544800-160546800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
35	chr1:160544800-160549200	Active TSS	Rectal Mucosa Donor 29	rectum

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