Variant report

Variant	rs1553550
Chromosome Location	chr5:8499805-8499806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11749505	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11750636	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11948129	0.83[MEX][hapmap]
rs11954773	0.80[AMR][1000 genomes]
rs12109871	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13159996	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13169740	0.80[AMR][1000 genomes]
rs13177847	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13189206	0.83[MEX][hapmap];0.80[AMR][1000 genomes]
rs1394640	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1394641	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1505004	0.84[EUR][1000 genomes]
rs1505005	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17216061	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2121937	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2197775	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2197776	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2218661	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2218662	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34687867	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35014582	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs369938	0.94[ASN][1000 genomes]
rs370304	0.91[ASN][1000 genomes]
rs382760	0.91[ASN][1000 genomes]
rs394290	0.91[ASN][1000 genomes]
rs444121	0.91[ASN][1000 genomes]
rs4702554	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4702556	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033505	chr5:8258074-8657627	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv537634	chr5:8258074-8657627	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1026496	chr5:8275119-8681693	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv537635	chr5:8275119-8681693	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
5	nsv427709	chr5:8353876-8519855	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
6	nsv880933	chr5:8467174-8688962	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv461929	chr5:8467900-8664747	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv597028	chr5:8467900-8664747	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv470987	chr5:8467900-8680327	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:8499800-8502000	Enhancers	NHDF-Ad	bronchial

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