The 2.0 version of rSNPBase

Variant report

Variant rs1554338
Chromosome Location chr11:45906830-45906831
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:45895000-45907200 Weak transcription HUVEC blood vessel
2 chr11:45898800-45907200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
3 chr11:45902800-45907000 Weak transcription Psoas Muscle Psoas
4 chr11:45903200-45907200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
5 chr11:45903200-45907200 Weak transcription NHDF-Ad bronchial
6 chr11:45905000-45907200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
7 chr11:45906400-45907400 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
8 chr11:45906400-45907800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
9 chr11:45906600-45907000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr11:45906600-45907000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr11:45906600-45907000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
12 chr11:45906600-45907000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
13 chr11:45906600-45907000 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
14 chr11:45906600-45907000 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr11:45906600-45907000 Flanking Active TSS Adipose Nuclei Adipose
16 chr11:45906600-45907000 Flanking Active TSS Brain Germinal Matrix brain
17 chr11:45906600-45907000 Flanking Active TSS Brain Inferior Temporal Lobe brain
18 chr11:45906600-45907000 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
19 chr11:45906600-45907000 Enhancers Fetal Brain Male brain
20 chr11:45906600-45907000 Enhancers Fetal Heart heart
21 chr11:45906600-45907000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
22 chr11:45906600-45907000 Bivalent Enhancer Small Intestine intestine
23 chr11:45906600-45907000 Flanking Active TSS Stomach Smooth Muscle stomach
24 chr11:45906600-45907000 Flanking Active TSS Dnd41 blood
25 chr11:45906600-45907000 Flanking Active TSS Hela-S3 cervix
26 chr11:45906600-45907400 Enhancers Primary T killer naive cells fromperipheralblood blood
27 chr11:45906600-45907400 Enhancers Placenta Placenta
28 chr11:45906600-45907600 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr11:45906600-45907600 Active TSS Primary T cells from cord blood blood
30 chr11:45906600-45907600 Enhancers Stomach Mucosa stomach
31 chr11:45906600-45907600 Bivalent/Poised TSS HSMMtube muscle
32 chr11:45906600-45907800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
33 chr11:45906600-45908000 Active TSS iPS-20b Cell Line embryonic stem cell
34 chr11:45906600-45908000 Active TSS Fetal Brain Female brain
35 chr11:45906600-45908200 Active TSS iPS-15b Cell Line embryonic stem cell
36 chr11:45906600-45908200 Active TSS Brain Angular Gyrus brain
37 chr11:45906600-45908400 Bivalent/Poised TSS HUES6 Cell Line embryonic stem cell
38 chr11:45906600-45908400 Active TSS Pancreatic Islets Pancreatic Islet
39 chr11:45906800-45907000 Flanking Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr11:45906800-45907000 Flanking Active TSS HUES48 Cell Line embryonic stem cell
41 chr11:45906800-45907000 Flanking Bivalent TSS/Enh IMR90 fetal lung fibroblasts Cell Line lung
42 chr11:45906800-45907000 Flanking Active TSS iPS DF 19.11 Cell Line embryonic stem cell
43 chr11:45906800-45907000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr11:45906800-45907000 Flanking Active TSS ES-UCSF4 Cell Line embryonic stem cell
45 chr11:45906800-45907000 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
46 chr11:45906800-45907000 Flanking Active TSS Primary B cells from peripheral blood blood
47 chr11:45906800-45907000 Flanking Bivalent TSS/Enh Primary T cells fromperipheralblood blood
48 chr11:45906800-45907000 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
49 chr11:45906800-45907000 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
50 chr11:45906800-45907000 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015