The 2.0 version of rSNPBase

Variant report

Variant rs1554400
Chromosome Location chr16:65117138-65117139
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:65095800-65152000 Weak transcription Fetal Intestine Large intestine
2 chr16:65105400-65117200 Weak transcription HMEC breast
3 chr16:65106200-65147400 Weak transcription Fetal Adrenal Gland Adrenal Gland
4 chr16:65106400-65120000 Weak transcription Brain Germinal Matrix brain
5 chr16:65106400-65120400 Weak transcription Aorta Aorta
6 chr16:65106400-65128400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr16:65106400-65147600 Weak transcription Fetal Muscle Trunk muscle
8 chr16:65106800-65132400 Weak transcription HSMMtube muscle
9 chr16:65106800-65151800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
10 chr16:65107000-65124000 Weak transcription NHLF lung
11 chr16:65107000-65132400 Weak transcription Muscle Satellite Cultured Cells --
12 chr16:65107400-65132600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr16:65110000-65126200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr16:65112800-65117200 Weak transcription Brain Anterior Caudate brain
15 chr16:65112800-65127400 Weak transcription Brain Cingulate Gyrus brain
16 chr16:65113200-65141600 Weak transcription Stomach Smooth Muscle stomach
17 chr16:65113600-65119200 Weak transcription NH-A brain
18 chr16:65113600-65128600 Weak transcription Fetal Kidney kidney
19 chr16:65113600-65136400 Weak transcription Spleen Spleen
20 chr16:65113600-65138800 Weak transcription Fetal Muscle Leg muscle
21 chr16:65113800-65140400 Weak transcription Fetal Brain Male brain
22 chr16:65115000-65118400 Strong transcription Fetal Stomach stomach
23 chr16:65115600-65117800 Genic enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr16:65115800-65117600 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr16:65115800-65118000 Genic enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr16:65115800-65118200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
27 chr16:65115800-65147600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr16:65116400-65117200 Weak transcription Breast Myoepithelial Primary Cells Breast
29 chr16:65116400-65117200 Weak transcription Ovary ovary
30 chr16:65116400-65136800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr16:65116600-65117400 Genic enhancers Fetal Lung lung
32 chr16:65116600-65117600 Enhancers Brain Substantia Nigra brain
33 chr16:65116800-65117200 Enhancers Fetal Brain Female brain
34 chr16:65116800-65117200 Strong transcription Placenta Placenta
35 chr16:65116800-65117400 Enhancers Brain Hippocampus Middle brain
36 chr16:65116800-65121200 Weak transcription HSMM muscle
37 chr16:65117000-65117400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
38 chr16:65117000-65117400 Enhancers Brain Angular Gyrus brain
39 chr16:65117000-65117600 Enhancers Brain Inferior Temporal Lobe brain
40 chr16:65117000-65118000 Enhancers NHDF-Ad bronchial
41 chr16:65117000-65118200 Genic enhancers Osteobl bone
42 chr16:65117000-65118600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015