Variant report
| Variant | rs1555768 |
|---|---|
| Chromosome Location | chr6:23727486-23727487 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:23727349..23729834-chr6:23731098..23732910,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10946620 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1325019 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1535985 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1555761 | 0.85[AMR][1000 genomes] |
| rs1555763 | 0.87[AMR][1000 genomes] |
| rs1555766 | 0.87[AMR][1000 genomes] |
| rs1886562 | 0.80[AMR][1000 genomes] |
| rs1886564 | 0.80[AMR][1000 genomes] |
| rs1925199 | 0.80[AMR][1000 genomes] |
| rs1925201 | 0.80[AMR][1000 genomes] |
| rs2147700 | 0.80[AMR][1000 genomes] |
| rs2181939 | 0.84[AMR][1000 genomes] |
| rs2328789 | 0.82[AMR][1000 genomes] |
| rs2328790 | 0.82[AMR][1000 genomes] |
| rs7755256 | 0.82[AMR][1000 genomes] |
| rs7770775 | 0.80[AMR][1000 genomes] |
| rs9348589 | 0.82[AMR][1000 genomes] |
| rs9348590 | 0.82[AMR][1000 genomes] |
| rs9393452 | 0.82[AMR][1000 genomes] |
| rs9393453 | 0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv1027773 | chr6:23644898-23776497 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3442143 | chr6:23686264-23978363 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv14730 | chr6:23711548-23746486 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:23726800-23730000 | Weak transcription | Stomach Mucosa | stomach |
