Variant report

Variant	rs1556202
Chromosome Location	chr1:63571746-63571747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58249434	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428741	chr1:63422898-63601892	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv461661	chr1:63441761-63609387	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv546432	chr1:63441761-63609387	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:63569000-63572800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:63569200-63574400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr1:63569200-63574600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr1:63569200-63574800	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr1:63569200-63575000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:63570000-63575200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:63570600-63574000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:63570600-63575400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:63570800-63572000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:63570800-63572400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:63570800-63573800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:63571000-63573000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:63571200-63572800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:63571400-63572400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:63571600-63572000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr1:63571600-63572000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr1:63571600-63572600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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