Variant report
| Variant | rs1556621 |
|---|---|
| Chromosome Location | chr6:92299096-92299097 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12211740 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1535334 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1556622 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2039500 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2039501 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2875621 | 0.90[ASN][1000 genomes] |
| rs4141509 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4315987 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4388265 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4613794 | 0.90[ASN][1000 genomes] |
| rs6911973 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6926708 | 0.83[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs71540026 | 0.90[EUR][1000 genomes] |
| rs7739331 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7769243 | 0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7775300 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9353859 | 0.83[AFR][1000 genomes] |
| rs9359954 | 0.92[EUR][1000 genomes] |
| rs9359955 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9362898 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017467 | chr6:91802015-92417554 | Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv538360 | chr6:91802015-92417554 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv1023081 | chr6:92223791-92307605 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionmiRNA | 1 gene(s) | inside rSNPs | n/a |
| 4 | nsv1034981 | chr6:92280070-92530848 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:92298600-92299200 | Enhancers | Muscle Satellite Cultured Cells | -- |
