Variant report

Variant	rs1557110
Chromosome Location	chr10:6377100-6377101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10796009	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535694	0.96[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1535695	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1969788	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1969789	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1974346	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2021951	0.94[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2031222	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2224781	0.96[GIH][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4748021	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4750311	0.91[CEU][hapmap];0.84[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4750312	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6602623	0.84[ASN][1000 genomes]
rs7087682	0.82[JPT][hapmap]
rs7896561	0.84[CHB][hapmap];0.93[JPT][hapmap]
rs7917852	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7923615	0.81[ASN][1000 genomes]
rs947477	0.94[JPT][hapmap]
rs9651529	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1054044	chr10:6155144-6487217	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv894836	chr10:6246678-6435374	Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv430123	chr10:6309402-6448384	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv430125	chr10:6322167-6477267	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6356000-6388200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr10:6356200-6377600	Weak transcription	Ovary	ovary
3	chr10:6357200-6397400	Weak transcription	Pancreas	Pancrea
4	chr10:6362800-6382600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:6371200-6377600	Weak transcription	Brain Substantia Nigra	brain
6	chr10:6371400-6385200	Weak transcription	Spleen	Spleen
7	chr10:6371600-6377600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:6371600-6389800	Weak transcription	Aorta	Aorta
9	chr10:6371800-6389400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:6372000-6387800	Weak transcription	Primary T cells from cord blood	blood
11	chr10:6372400-6377600	Weak transcription	Brain Hippocampus Middle	brain
12	chr10:6373800-6384000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:6374000-6386400	Weak transcription	Adipose Nuclei	Adipose
14	chr10:6375400-6380800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:6376400-6387400	Weak transcription	Dnd41	blood
16	chr10:6376800-6389400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:6377000-6379800	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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