Variant report

Variant	rs1557160
Chromosome Location	chr6:78077556-78077557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10943451	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1342633	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1342634	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1342635	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1342639	0.84[ASN][1000 genomes]
rs1419089	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1539580	0.83[EUR][1000 genomes]
rs1935737	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2226150	0.82[EUR][1000 genomes]
rs2320294	0.87[ASN][1000 genomes]
rs2874225	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4142468	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4708327	0.83[EUR][1000 genomes]
rs4708331	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6902991	0.83[EUR][1000 genomes]
rs6911609	0.80[EUR][1000 genomes]
rs6942008	0.89[ASN][1000 genomes]
rs7772336	0.89[ASN][1000 genomes]
rs9341664	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9350703	0.80[EUR][1000 genomes]
rs9350706	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9352477	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9361224	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78044200-78078200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:78070200-78078200	Weak transcription	Left Ventricle	heart
3	chr6:78072400-78078200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:78072400-78078400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:78073600-78078000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:78074200-78078200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:78076000-78079000	Active TSS	HUVEC	blood vessel
8	chr6:78076200-78077800	Enhancers	Duodenum Mucosa	Duodenum
9	chr6:78076600-78078000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:78076600-78079000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:78076600-78079000	Active TSS	NHEK	skin
12	chr6:78076600-78079200	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:78076800-78078000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:78076800-78078800	Active TSS	Aorta	Aorta
15	chr6:78077000-78079000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:78077000-78079000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:78077000-78079000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:78077000-78079200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:78077200-78078800	Active TSS	Fetal Heart	heart
20	chr6:78077200-78079000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr6:78077200-78079400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:78077400-78078200	Weak transcription	Right Ventricle	heart
23	chr6:78077400-78079000	Active TSS	HUES6 Cell Line	embryonic stem cell
24	chr6:78077400-78079000	Active TSS	NHDF-Ad	bronchial
25	chr6:78077400-78079000	Active TSS	NHLF	lung

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