Variant report

Variant	rs1558169
Chromosome Location	chr17:67236736-67236737
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67231929..67233589-chr17:67235089..67237342,2	K562	blood:
2	chr17:67235995..67239986-chr17:67240583..67244208,4	K562	blood:

Variant related genes	Relation type
ENSG00000154263	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16973838	1.00[AMR][1000 genomes]
rs487382	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs511854	1.00[AMR][1000 genomes]
rs520754	1.00[AMR][1000 genomes]
rs533899	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs544261	1.00[AMR][1000 genomes]
rs544829	1.00[AMR][1000 genomes]
rs551226	0.80[AFR][1000 genomes]
rs564426	1.00[AMR][1000 genomes]
rs568354	1.00[AMR][1000 genomes]
rs707243	0.94[YRI][hapmap]
rs7208246	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7215788	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv575932	chr17:67149973-67327806	Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv457889	chr17:67210992-67332355	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a
3	nsv575934	chr17:67210992-67332355	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67207600-67247800	Weak transcription	Left Ventricle	heart
2	chr17:67215600-67239200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr17:67215600-67249200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:67224600-67248600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr17:67230600-67241400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr17:67230600-67259600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr17:67230800-67253400	Weak transcription	Fetal Muscle Leg	muscle
8	chr17:67230800-67271800	Weak transcription	Pancreas	Pancrea
9	chr17:67231600-67237000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr17:67231600-67246600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr17:67231800-67236800	Weak transcription	Fetal Intestine Large	intestine
12	chr17:67231800-67238600	Weak transcription	Fetal Intestine Small	intestine
13	chr17:67231800-67239000	Weak transcription	GM12878-XiMat	blood
14	chr17:67231800-67239200	Weak transcription	Liver	Liver
15	chr17:67231800-67247000	Weak transcription	Primary T cells from cord blood	blood
16	chr17:67231800-67247000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr17:67231800-67247000	Weak transcription	HUVEC	blood vessel
18	chr17:67231800-67249000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr17:67231800-67252600	Weak transcription	Fetal Thymus	thymus
20	chr17:67231800-67254400	Weak transcription	Lung	lung
21	chr17:67232600-67249000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr17:67233000-67238200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr17:67233600-67245000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr17:67233800-67239800	Weak transcription	Esophagus	oesophagus
25	chr17:67234400-67240200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr17:67234600-67249200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr17:67234800-67250600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr17:67235000-67239400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr17:67235000-67289000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr17:67235200-67236800	Enhancers	Brain Angular Gyrus	brain
31	chr17:67235200-67237400	Weak transcription	Adipose Nuclei	Adipose
32	chr17:67235200-67238400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr17:67235200-67240000	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr17:67235600-67239600	Weak transcription	Placenta	Placenta
35	chr17:67235800-67237200	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr17:67236000-67236800	Enhancers	Brain Anterior Caudate	brain
37	chr17:67236000-67236800	Enhancers	Psoas Muscle	Psoas
38	chr17:67236000-67238800	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr17:67236000-67283000	Weak transcription	Ovary	ovary
40	chr17:67236200-67236800	Enhancers	Brain Substantia Nigra	brain
41	chr17:67236200-67237200	Strong transcription	Aorta	Aorta
42	chr17:67236200-67237200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr17:67236400-67252400	Weak transcription	Fetal Lung	lung
44	chr17:67236400-67278000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr17:67236600-67239000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr17:67236600-67241400	Weak transcription	Brain Hippocampus Middle	brain
47	chr17:67236600-67241800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr17:67236600-67248600	Weak transcription	Brain Cingulate Gyrus	brain
49	chr17:67236600-67251600	Weak transcription	Rectal Smooth Muscle	rectum

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