Variant report

Variant	rs1558857
Chromosome Location	chr14:77470757-77470758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:77440773..77445742-chr14:77470675..77476262,8	MCF-7	breast:
2	chr14:77470086..77472211-chr14:77479278..77481891,2	MCF-7	breast:
3	chr14:77465434..77468228-chr14:77469057..77471689,3	MCF-7	breast:
4	chr14:77379711..77382830-chr14:77470519..77474694,5	MCF-7	breast:
5	chr14:77423692..77424204-chr14:77470602..77471180,2	MCF-7	breast:
6	chr14:77469210..77471174-chr14:77476566..77478537,2	K562	blood:
7	chr14:77464297..77467246-chr14:77468821..77471508,3	MCF-7	breast:
8	chr14:77461093..77463996-chr14:77468832..77471549,3	MCF-7	breast:
9	chr14:77460054..77462541-chr14:77469440..77471746,2	MCF-7	breast:
10	chr14:77418514..77432216-chr14:77468884..77482085,46	MCF-7	breast:
11	chr14:77447734..77449417-chr14:77470492..77472632,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258602	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1990737	0.82[CHB][hapmap]
rs4899632	0.86[ASN][1000 genomes]
rs4903527	0.82[CHB][hapmap];0.91[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1037915	chr14:77461610-77561454	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv542142	chr14:77461610-77561454	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
4	nsv565210	chr14:77461701-77492891	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1792437	chr14:77468802-77529928	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77466800-77481400	Enhancers	Pancreas	Pancrea
2	chr14:77467200-77473800	Weak transcription	Aorta	Aorta
3	chr14:77467400-77470800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:77467400-77472400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:77467400-77473200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:77467400-77473400	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:77467400-77473400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr14:77467400-77478600	Weak transcription	Brain Substantia Nigra	brain
9	chr14:77467600-77470800	Weak transcription	Fetal Kidney	kidney
10	chr14:77467600-77471200	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr14:77467600-77472600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:77467600-77473200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:77467600-77473200	Weak transcription	Colonic Mucosa	Colon
14	chr14:77467600-77473200	Weak transcription	Fetal Brain Female	brain
15	chr14:77467600-77473200	Weak transcription	Left Ventricle	heart
16	chr14:77467800-77470800	Weak transcription	NHDF-Ad	bronchial
17	chr14:77467800-77472200	Weak transcription	Fetal Stomach	stomach
18	chr14:77467800-77472600	Weak transcription	Psoas Muscle	Psoas
19	chr14:77467800-77473200	Weak transcription	Spleen	Spleen
20	chr14:77468000-77472200	Weak transcription	Fetal Muscle Leg	muscle
21	chr14:77468000-77472600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr14:77468000-77473200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr14:77468400-77470800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:77468400-77471000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr14:77468400-77473200	Weak transcription	Fetal Brain Male	brain
26	chr14:77468400-77485200	Enhancers	Placenta	Placenta
27	chr14:77468600-77474000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr14:77468600-77475000	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr14:77468800-77473800	Enhancers	Liver	Liver
30	chr14:77469000-77471200	Enhancers	HepG2	liver
31	chr14:77469000-77475600	Enhancers	Lung	lung
32	chr14:77469000-77476200	Enhancers	Stomach Mucosa	stomach
33	chr14:77469200-77470800	Weak transcription	Fetal Thymus	thymus
34	chr14:77469200-77471600	Enhancers	Gastric	stomach
35	chr14:77469400-77475200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr14:77469800-77473400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr14:77470000-77471600	Enhancers	Fetal Heart	heart
38	chr14:77470000-77471600	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr14:77470000-77471800	Enhancers	Hela-S3	cervix
40	chr14:77470000-77472400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr14:77470000-77473000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr14:77470000-77474600	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr14:77470000-77474800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr14:77470000-77476800	Enhancers	Esophagus	oesophagus
45	chr14:77470200-77470800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:77470200-77470800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr14:77470200-77471000	Enhancers	K562	blood
48	chr14:77470200-77471200	Enhancers	Fetal Intestine Large	intestine
49	chr14:77470200-77471200	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr14:77470200-77471600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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