Variant report

Variant	rs1559055
Chromosome Location	chr5:97445276-97445277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10051746	0.93[ASN][1000 genomes]
rs11741226	0.99[ASN][1000 genomes]
rs12513592	0.83[ASN][1000 genomes]
rs1363141	0.99[ASN][1000 genomes]
rs1363142	0.99[ASN][1000 genomes]
rs1421793	0.99[ASN][1000 genomes]
rs1421800	0.94[ASN][1000 genomes]
rs1421802	0.94[ASN][1000 genomes]
rs1421803	0.93[ASN][1000 genomes]
rs4130406	0.97[ASN][1000 genomes]
rs4134469	0.95[ASN][1000 genomes]
rs4568385	0.95[ASN][1000 genomes]
rs4869401	0.93[ASN][1000 genomes]
rs4869402	0.92[ASN][1000 genomes]
rs5009396	0.94[ASN][1000 genomes]
rs56817383	0.93[ASN][1000 genomes]
rs59027384	0.95[ASN][1000 genomes]
rs59396409	0.90[ASN][1000 genomes]
rs59750199	0.90[ASN][1000 genomes]
rs62368546	0.95[ASN][1000 genomes]
rs6557032	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6881840	0.93[ASN][1000 genomes]
rs6889775	0.89[ASN][1000 genomes]
rs6892262	0.99[ASN][1000 genomes]
rs72769607	0.93[ASN][1000 genomes]
rs7730814	0.99[ASN][1000 genomes]
rs7733470	0.92[ASN][1000 genomes]
rs950194	0.94[ASN][1000 genomes]
rs950195	0.94[ASN][1000 genomes]
rs9791040	0.96[ASN][1000 genomes]
rs9791126	0.95[ASN][1000 genomes]
rs9800399	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882404	chr5:97281641-97638743	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031989	chr5:97333291-97524353	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1034472	chr5:97357264-97523965	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758004	chr5:97395508-97550089	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2759357	chr5:97395508-97616089	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv599076	chr5:97423476-97478555	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv32866	chr5:97424721-97463865	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2753887	chr5:97439630-97532740	Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2757123	chr5:97442526-97616089	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97440200-97447800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:97442200-97446400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:97442200-97447600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:97442600-97446000	Weak transcription	Fetal Lung	lung
5	chr5:97443000-97447000	Enhancers	HUVEC	blood vessel
6	chr5:97443400-97447800	Enhancers	HMEC	breast
7	chr5:97443600-97446000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:97444600-97445400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr5:97444600-97445400	Flanking Active TSS	NH-A	brain
10	chr5:97444800-97445400	Flanking Active TSS	NHEK	skin
11	chr5:97444800-97446000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:97444800-97446200	Enhancers	HSMMtube	muscle
13	chr5:97445000-97445400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:97445000-97445400	Flanking Active TSS	HSMM	muscle
15	chr5:97445000-97445400	Flanking Active TSS	NHDF-Ad	bronchial
16	chr5:97445000-97445400	Flanking Active TSS	NHLF	lung
17	chr5:97445000-97445600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr5:97445000-97445600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr5:97445000-97445600	Flanking Active TSS	Osteobl	bone
20	chr5:97445000-97445800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:97445200-97445400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:97445200-97445400	Enhancers	Fetal Stomach	stomach
23	chr5:97445200-97445400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
24	chr5:97445200-97445600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:97445200-97445600	Enhancers	Brain Hippocampus Middle	brain
26	chr5:97445200-97445800	Enhancers	Fetal Muscle Leg	muscle
27	chr5:97445200-97446400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:97445200-97446400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:97445200-97447800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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