Variant report

Variant	rs1559230
Chromosome Location	chr5:36279294-36279295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36272403..36275223-chr5:36277459..36279344,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10039862	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1035480	0.81[CHB][hapmap]
rs10512637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10737962	0.80[CHB][hapmap]
rs10805612	0.81[CHB][hapmap]
rs1118442	0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs12697356	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345776	0.80[CHB][hapmap]
rs1363843	0.83[CHB][hapmap]
rs1423223	0.81[CHB][hapmap]
rs1423224	0.81[CHB][hapmap]
rs1423225	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423226	0.80[CHB][hapmap]
rs1500224	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1862544	0.81[CHB][hapmap]
rs2362978	0.81[CHB][hapmap]
rs2362980	0.81[CHB][hapmap]
rs2363034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2363036	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33663	0.81[CHB][hapmap]
rs4869635	0.81[CHB][hapmap]
rs6451269	0.81[CHB][hapmap]
rs6451270	0.81[CHB][hapmap]
rs6869599	0.80[CHB][hapmap]
rs6874389	0.81[CHB][hapmap]
rs6881086	0.81[CHB][hapmap]
rs6886098	0.81[CHB][hapmap]
rs6892199	0.81[CHB][hapmap]
rs716636	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs716637	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7705209	0.81[CHB][hapmap]
rs7705985	0.85[CHB][hapmap]
rs7724057	0.90[CHB][hapmap]
rs958929	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36262800-36283800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:36269600-36279600	Weak transcription	Brain Angular Gyrus	brain
3	chr5:36272600-36281800	Weak transcription	Brain Substantia Nigra	brain
4	chr5:36273600-36279800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:36274800-36282800	Weak transcription	Brain Anterior Caudate	brain
6	chr5:36275200-36281600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:36276800-36280400	Enhancers	Adipose Nuclei	Adipose
8	chr5:36277200-36279400	Weak transcription	Ovary	ovary
9	chr5:36277200-36282600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr5:36278400-36280400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:36278400-36280600	Enhancers	HSMM	muscle
12	chr5:36278600-36280000	Weak transcription	Brain Hippocampus Middle	brain
13	chr5:36278800-36280000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:36278800-36282000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:36279000-36279400	Flanking Active TSS	Osteobl	bone
16	chr5:36279000-36279600	Active TSS	Aorta	Aorta
17	chr5:36279000-36279800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:36279000-36280000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:36279000-36280600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:36279200-36279400	Flanking Active TSS	NHDF-Ad	bronchial
21	chr5:36279200-36279600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr5:36279200-36280400	Enhancers	HSMMtube	muscle

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