Variant report

Variant	rs1559312
Chromosome Location	chr16:82918651-82918652
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11150502	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs11150507	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11150515	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs11150516	0.81[ASN][1000 genomes]
rs11150517	0.86[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs11150518	0.86[JPT][hapmap]
rs11862361	0.81[ASN][1000 genomes]
rs12446335	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12716955	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12928678	1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1559311	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs192598	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs192599	0.90[YRI][hapmap]
rs1991024	0.86[JPT][hapmap];0.89[YRI][hapmap]
rs1991025	0.89[YRI][hapmap]
rs2059230	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2113138	0.89[YRI][hapmap]
rs2113140	0.86[JPT][hapmap]
rs2194285	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs2194287	0.84[ASN][1000 genomes]
rs2216739	0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs2549141	0.86[JPT][hapmap];0.89[YRI][hapmap]
rs2615127	0.86[JPT][hapmap]
rs2615128	0.86[JPT][hapmap];0.89[YRI][hapmap]
rs286676	0.86[JPT][hapmap]
rs286678	1.00[YRI][hapmap]
rs286680	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs286687	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs35359335	0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4485358	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4513093	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4782736	0.89[YRI][hapmap]
rs4783290	0.89[YRI][hapmap]
rs4783292	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4783293	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4783294	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4783296	0.81[ASN][1000 genomes]
rs6565075	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7184056	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7198913	0.84[AMR][1000 genomes]
rs7201088	0.84[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7201829	0.86[JPT][hapmap];1.00[YRI][hapmap];0.86[ASN][1000 genomes]
rs7498269	0.86[JPT][hapmap];0.90[YRI][hapmap]
rs8051136	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs8052008	1.00[YRI][hapmap]
rs8052174	0.86[JPT][hapmap];1.00[YRI][hapmap];0.84[ASN][1000 genomes]
rs8053647	1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs8063966	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs918660	0.89[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs918661	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs929846	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs929847	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs929848	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9319576	1.00[YRI][hapmap]
rs9319577	1.00[YRI][hapmap]
rs9319578	0.86[JPT][hapmap]
rs9921828	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs9921848	0.82[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs9931196	0.88[CEU][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9933586	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9933935	0.94[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9936039	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv2830385	chr16:82841335-82950413	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv573382	chr16:82905546-82950502	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82905600-82921000	Weak transcription	Fetal Muscle Leg	muscle
2	chr16:82905800-82924800	Weak transcription	HSMM	muscle
3	chr16:82905800-82925200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:82908800-82922000	Weak transcription	Aorta	Aorta
5	chr16:82909800-82921600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr16:82910400-82932600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:82911000-82921800	Weak transcription	HSMMtube	muscle
8	chr16:82912800-82921600	Weak transcription	Colon Smooth Muscle	Colon
9	chr16:82913000-82921800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr16:82915200-82922200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr16:82915400-82920800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr16:82915600-82922000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr16:82915800-82953000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr16:82916200-82922000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr16:82916800-82922200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr16:82917400-82922000	Weak transcription	Right Ventricle	heart
17	chr16:82917600-82922000	Weak transcription	Right Atrium	heart
18	chr16:82918000-82921600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr16:82918200-82920800	Weak transcription	Psoas Muscle	Psoas
20	chr16:82918200-82920800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr16:82918200-82921800	Weak transcription	Left Ventricle	heart

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