Variant report

Variant	rs1559627
Chromosome Location	chr2:173646961-173646962
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1111510	0.87[AFR][1000 genomes]
rs12693011	1.00[AMR][1000 genomes]
rs1451448	0.85[AFR][1000 genomes]
rs2357806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2357807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6728765	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs836645	0.87[AMR][1000 genomes]
rs865641	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173642600-173669800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:173646000-173648800	Enhancers	HMEC	breast
3	chr2:173646600-173647400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:173646600-173647400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:173646600-173648000	Enhancers	NHDF-Ad	bronchial
6	chr2:173646600-173648400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:173646600-173648800	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr2:173646600-173648800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:173646800-173647200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:173646800-173647600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr2:173646800-173648000	Enhancers	NH-A	brain
12	chr2:173646800-173648000	Enhancers	NHLF	lung
13	chr2:173646800-173648200	Enhancers	Osteobl	bone
14	chr2:173646800-173648400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr2:173646800-173648600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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