Variant report

Variant	rs1559710
Chromosome Location	chr4:143520240-143520241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:143516751..143518964-chr4:143518967..143521709,2	MCF-7	breast:
2	chr4:143517546..143521080-chr4:143535706..143539870,4	MCF-7	breast:
3	chr4:143518531..143520300-chr4:143521688..143524164,2	MCF-7	breast:
4	chr4:143388165..143401257-chr4:143512284..143528837,40	MCF-7	breast:
5	chr4:143391752..143397700-chr4:143513549..143524281,24	MCF-7	breast:
6	chr4:143512089..143514343-chr4:143518901..143520578,2	MCF-7	breast:
7	chr4:143515194..143518460-chr4:143519756..143524261,5	MCF-7	breast:
8	chr4:143504828..143506931-chr4:143519506..143521581,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143511800-143521200	Weak transcription	Primary T cells from cord blood	blood
2	chr4:143516000-143523800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143516400-143520400	Strong transcription	Primary T helper cells PMA-I stimulated	--
4	chr4:143517000-143530200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:143517400-143539400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:143518400-143524200	Weak transcription	Aorta	Aorta
7	chr4:143519200-143520400	Enhancers	Pancreas	Pancrea
8	chr4:143519200-143520600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
9	chr4:143519400-143520600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:143519400-143520600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:143519400-143520800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr4:143519600-143521000	Weak transcription	Liver	Liver
13	chr4:143519600-143525000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:143519800-143520600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr4:143519800-143520800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr4:143519800-143522800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:143520000-143520400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:143520000-143520600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
19	chr4:143520000-143520800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
20	chr4:143520000-143536000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:143520200-143520600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links