Variant report

Variant	rs1559882
Chromosome Location	chr15:42243997-42243998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1451047	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1614205	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1668590	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1668591	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1704408	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1704409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2724932	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57032192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv427958	chr15:42051317-42301283	Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1038933	chr15:42138456-42309087	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
5	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv1054728	chr15:42177772-42310009	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
8	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42222200-42249800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:42227600-42249200	Weak transcription	Small Intestine	intestine
3	chr15:42230000-42248400	Strong transcription	GM12878-XiMat	blood
4	chr15:42230000-42249600	Weak transcription	K562	blood
5	chr15:42230400-42262200	Weak transcription	Thymus	Thymus
6	chr15:42230800-42247000	Weak transcription	Fetal Thymus	thymus
7	chr15:42230800-42249400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:42231200-42244600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr15:42231200-42249800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr15:42231600-42250000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:42232200-42244800	Genic enhancers	Fetal Muscle Leg	muscle
12	chr15:42233200-42244200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:42234400-42244000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:42235400-42244200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:42237400-42244200	Weak transcription	Hela-S3	cervix
16	chr15:42237400-42245200	Weak transcription	HepG2	liver
17	chr15:42237800-42244400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:42238200-42250200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr15:42239200-42244000	Enhancers	Adipose Nuclei	Adipose
20	chr15:42239400-42246400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:42239600-42247400	Weak transcription	Psoas Muscle	Psoas
22	chr15:42239800-42244400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:42240200-42248000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:42240400-42251800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:42240400-42252600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:42241000-42244800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:42241000-42249600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:42241200-42259200	Weak transcription	Brain Anterior Caudate	brain
29	chr15:42241400-42245800	Genic enhancers	HUVEC	blood vessel
30	chr15:42241600-42246200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:42241600-42246600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr15:42241600-42247000	Strong transcription	Fetal Intestine Small	intestine
33	chr15:42241800-42244000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:42242000-42244000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:42242000-42244200	Enhancers	Right Ventricle	heart
36	chr15:42242000-42244400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr15:42242000-42244800	Genic enhancers	Fetal Muscle Trunk	muscle
38	chr15:42242000-42244800	Genic enhancers	Lung	lung
39	chr15:42242000-42244800	Enhancers	Right Atrium	heart
40	chr15:42242000-42245000	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr15:42242000-42245800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr15:42242000-42246000	Strong transcription	HMEC	breast
43	chr15:42242000-42246200	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr15:42242000-42246400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:42242000-42246400	Strong transcription	NHEK	skin
46	chr15:42242000-42246600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:42242000-42250800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr15:42242200-42246000	Strong transcription	Primary T cells from cord blood	blood
49	chr15:42242200-42246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:42242200-42246400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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