Variant report

Variant	rs1560375
Chromosome Location	chr2:183386143-183386144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10931017	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931020	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10931022	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12621579	0.81[AMR][1000 genomes]
rs1430146	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430149	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1594306	0.81[AMR][1000 genomes]
rs1835340	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082135	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368281	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2368282	0.87[EUR][1000 genomes]
rs2368300	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368301	0.81[EUR][1000 genomes]
rs2368302	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666845	0.81[AMR][1000 genomes]
rs4666850	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433976	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747766	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760317	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs720245	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7557419	0.90[EUR][1000 genomes]
rs7595111	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934260	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs934261	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183361600-183392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:183376600-183387200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:183382800-183387400	Weak transcription	Psoas Muscle	Psoas
4	chr2:183383600-183387200	Active TSS	Fetal Brain Female	brain
5	chr2:183384600-183388400	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr2:183384800-183386800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:183384800-183387800	Active TSS	Fetal Brain Male	brain
8	chr2:183384800-183388800	Active TSS	Brain Angular Gyrus	brain
9	chr2:183385000-183388200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr2:183385000-183388400	Active TSS	Brain Hippocampus Middle	brain
11	chr2:183385200-183388200	Active TSS	Brain Cingulate Gyrus	brain
12	chr2:183385400-183388200	Active TSS	Brain Anterior Caudate	brain
13	chr2:183385800-183386800	Active TSS	Primary hematopoietic stem cells	blood
14	chr2:183385800-183386800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:183385800-183386800	Weak transcription	Brain Substantia Nigra	brain
16	chr2:183385800-183387000	Weak transcription	Brain Germinal Matrix	brain
17	chr2:183386000-183386200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived

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