Variant report

Variant	rs1562017
Chromosome Location	chr5:112490965-112490966
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11241194	0.89[CHB][hapmap]
rs12108764	1.00[YRI][hapmap]
rs1443686	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4374752	1.00[YRI][hapmap]
rs4705764	1.00[YRI][hapmap]
rs6594657	1.00[YRI][hapmap]
rs6594666	1.00[YRI][hapmap]
rs6594681	1.00[YRI][hapmap]
rs6862944	1.00[YRI][hapmap]
rs6881233	1.00[YRI][hapmap]
rs6881477	1.00[YRI][hapmap]
rs6882115	1.00[YRI][hapmap]
rs6895843	1.00[YRI][hapmap]
rs7731284	0.88[CHB][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs878074	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112467400-112493200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr5:112470200-112491000	Weak transcription	Fetal Kidney	kidney
3	chr5:112477400-112500600	Weak transcription	Fetal Stomach	stomach
4	chr5:112478000-112497000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr5:112481400-112496000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:112482600-112491400	Weak transcription	Adipose Nuclei	Adipose
7	chr5:112483000-112496800	Weak transcription	HMEC	breast
8	chr5:112483200-112495800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr5:112483400-112491800	Weak transcription	NHEK	skin
10	chr5:112483400-112494600	Weak transcription	Psoas Muscle	Psoas
11	chr5:112484200-112491800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:112484200-112495600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:112485800-112492200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:112485800-112495200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:112486800-112494600	Weak transcription	Lung	lung
16	chr5:112486800-112500400	Weak transcription	Gastric	stomach
17	chr5:112487200-112491200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:112487200-112498200	Weak transcription	Esophagus	oesophagus
19	chr5:112488200-112491600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:112488200-112492800	Weak transcription	Right Atrium	heart
21	chr5:112489000-112492200	Weak transcription	Fetal Heart	heart
22	chr5:112489200-112500000	Weak transcription	Liver	Liver
23	chr5:112490200-112491600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:112490200-112498600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:112490400-112491000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:112490400-112492000	Weak transcription	Left Ventricle	heart
27	chr5:112490400-112492200	Weak transcription	Ovary	ovary
28	chr5:112490400-112492600	Weak transcription	Right Ventricle	heart

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