Variant report

Variant	rs1563329
Chromosome Location	chr18:9711134-9711135
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:9611182..9615699-chr18:9705314..9711194,13	MCF-7	breast:
2	chr18:9708489..9711784-chr18:9913301..9917117,3	K562	blood:
3	chr18:9612544..9617098-chr18:9708301..9712595,6	MCF-7	breast:
4	chr18:9709717..9711927-chr18:9749957..9752685,2	K562	blood:
5	chr18:9608014..9609757-chr18:9710686..9713009,2	K562	blood:
6	chr18:9612884..9614768-chr18:9710138..9713056,2	K562	blood:
7	chr18:9708193..9711687-chr18:9848141..9849749,3	MCF-7	breast:
8	chr18:9709717..9711665-chr18:9750469..9752685,2	K562	blood:
9	chr18:9710094..9711758-chr18:9728271..9731556,3	K562	blood:
10	chr18:9710429..9712900-chr18:9763874..9766310,2	K562	blood:
11	chr18:9708382..9711324-chr18:9721162..9722931,2	MCF-7	breast:
12	chr18:9690587..9692144-chr18:9710230..9711771,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000168461	Chromatin interaction
ENSG00000263627	Chromatin interaction
ENSG00000154845	Chromatin interaction
ENSG00000101558	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs7226695	0.91[AMR][1000 genomes]
rs7240191	0.91[AMR][1000 genomes]
rs8090845	0.91[AMR][1000 genomes]
rs8091483	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs8092497	0.82[AMR][1000 genomes]
rs8096128	0.82[AMR][1000 genomes]
rs9947855	0.91[AMR][1000 genomes]
rs9967201	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv469897	chr18:9674498-9870517	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv482461	chr18:9674498-9870517	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv1064807	chr18:9695356-9770358	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9709200-9713000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr18:9709600-9711600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:9709600-9711600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
4	chr18:9709600-9712400	Enhancers	Spleen	Spleen
5	chr18:9709600-9713400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr18:9709800-9711200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr18:9709800-9711800	Weak transcription	Lung	lung
8	chr18:9709800-9712000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr18:9709800-9714400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:9710000-9711400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr18:9710000-9711800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:9710000-9711800	Weak transcription	Aorta	Aorta
13	chr18:9710000-9712000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr18:9710000-9712200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr18:9710000-9712200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr18:9710000-9712600	Enhancers	Placenta	Placenta
17	chr18:9710000-9719600	Weak transcription	HSMM	muscle
18	chr18:9710200-9711200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr18:9710200-9711400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr18:9710200-9711800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr18:9710200-9711800	Weak transcription	Esophagus	oesophagus
22	chr18:9710200-9711800	Weak transcription	Fetal Lung	lung
23	chr18:9710200-9712000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr18:9710200-9712200	Weak transcription	Gastric	stomach
25	chr18:9710200-9712400	Enhancers	Colon Smooth Muscle	Colon
26	chr18:9710200-9712600	Weak transcription	Fetal Heart	heart
27	chr18:9710200-9712600	Enhancers	Ovary	ovary
28	chr18:9710200-9713200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr18:9710200-9714600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr18:9710200-9733600	Weak transcription	Left Ventricle	heart
31	chr18:9710400-9711400	Strong transcription	NHEK	skin
32	chr18:9710400-9711600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr18:9710400-9711600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr18:9710400-9711600	Weak transcription	A549	lung
35	chr18:9710400-9711800	Weak transcription	HMEC	breast
36	chr18:9710400-9711800	Weak transcription	NH-A	brain
37	chr18:9710400-9712000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr18:9710400-9712000	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr18:9710400-9712200	Weak transcription	NHLF	lung
40	chr18:9710400-9712400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr18:9710400-9712600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr18:9710400-9712800	Enhancers	NHDF-Ad	bronchial
43	chr18:9710400-9713200	Enhancers	Osteobl	bone
44	chr18:9710400-9714200	Weak transcription	Brain Anterior Caudate	brain
45	chr18:9710400-9715200	Enhancers	K562	blood
46	chr18:9710400-9716800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr18:9710400-9718800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr18:9710400-9732000	Weak transcription	Fetal Stomach	stomach
49	chr18:9710600-9711600	Weak transcription	Fetal Muscle Leg	muscle
50	chr18:9710600-9712000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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