Variant report

Variant	rs1564553
Chromosome Location	chr4:86428641-86428642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6531825	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86413600-86429200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:86419800-86429600	Weak transcription	Esophagus	oesophagus
3	chr4:86419800-86429800	Weak transcription	Spleen	Spleen
4	chr4:86419800-86434000	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:86419800-86442200	Weak transcription	Left Ventricle	heart
6	chr4:86420800-86435000	Weak transcription	Primary B cells from cord blood	blood
7	chr4:86422000-86429800	Weak transcription	HSMM	muscle
8	chr4:86422000-86435000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:86422200-86433200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:86422200-86435400	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr4:86427400-86429800	Weak transcription	Pancreas	Pancrea
12	chr4:86427400-86435000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:86427600-86429800	Genic enhancers	Primary B cells from peripheral blood	blood
14	chr4:86427600-86430800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:86427800-86430000	Weak transcription	Lung	lung
16	chr4:86427800-86434000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:86428000-86429800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:86428000-86434200	Weak transcription	Psoas Muscle	Psoas
19	chr4:86428600-86428800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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