Variant report

Variant	rs1565942
Chromosome Location	chr12:64487686-64487687
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:64479951..64485061-chr12:64487402..64490440,5	MCF-7	breast:
2	chr12:64463327..64464942-chr12:64486134..64488721,2	K562	blood:
3	chr12:64486165..64487945-chr12:64494187..64495879,2	MCF-7	breast:
4	chr12:64475418..64478344-chr12:64485895..64488594,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10878102	0.80[CHB][hapmap]
rs1456046	0.81[CHB][hapmap]
rs789743	0.82[EUR][1000 genomes]
rs7980267	0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351487	chr12:64420364-64763950	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:64457000-64510600	Weak transcription	HepG2	liver
2	chr12:64474800-64521400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:64477400-64520800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr12:64482000-64488800	Enhancers	Fetal Brain Male	brain
5	chr12:64482600-64497600	Weak transcription	Fetal Kidney	kidney
6	chr12:64482800-64493000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr12:64482800-64503400	Weak transcription	Fetal Intestine Large	intestine
8	chr12:64483000-64492600	Weak transcription	Fetal Stomach	stomach
9	chr12:64483000-64492600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr12:64483000-64521400	Weak transcription	Liver	Liver
11	chr12:64483200-64491200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr12:64483200-64491200	Weak transcription	Fetal Intestine Small	intestine
13	chr12:64483200-64491400	Weak transcription	Brain Anterior Caudate	brain
14	chr12:64483200-64492400	Weak transcription	Colon Smooth Muscle	Colon
15	chr12:64483200-64498200	Weak transcription	Ovary	ovary
16	chr12:64483200-64502400	Weak transcription	Aorta	Aorta
17	chr12:64483200-64502400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr12:64483200-64503400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr12:64483200-64520800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr12:64483200-64521400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr12:64483400-64495600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr12:64483400-64503600	Weak transcription	Right Ventricle	heart
23	chr12:64483400-64505400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr12:64483600-64489200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr12:64483600-64491200	Weak transcription	Fetal Muscle Trunk	muscle
26	chr12:64483600-64491200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr12:64483600-64492600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr12:64483600-64503600	Weak transcription	Pancreas	Pancrea
29	chr12:64483600-64519800	Weak transcription	Gastric	stomach
30	chr12:64483600-64521400	Weak transcription	Lung	lung
31	chr12:64483800-64489400	Weak transcription	Osteobl	bone
32	chr12:64483800-64491200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr12:64483800-64491200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr12:64483800-64491200	Weak transcription	NH-A	brain
35	chr12:64483800-64492600	Weak transcription	Adipose Nuclei	Adipose
36	chr12:64484000-64492400	Weak transcription	HMEC	breast
37	chr12:64484000-64493200	Weak transcription	Hela-S3	cervix
38	chr12:64484200-64488800	Weak transcription	HSMM	muscle
39	chr12:64484200-64492600	Weak transcription	Brain Hippocampus Middle	brain
40	chr12:64484400-64491000	Weak transcription	HSMMtube	muscle
41	chr12:64484400-64491200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr12:64484600-64489200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr12:64485200-64488600	Weak transcription	NHLF	lung
44	chr12:64485200-64488800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr12:64485200-64492200	Weak transcription	Psoas Muscle	Psoas
46	chr12:64485200-64492400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr12:64485200-64492400	Weak transcription	Left Ventricle	heart
48	chr12:64485400-64502800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr12:64485800-64490600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr12:64485800-64491000	Weak transcription	Fetal Muscle Leg	muscle

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