Variant report

Variant	rs1567582
Chromosome Location	chr3:24036167-24036168
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24033094..24034761-chr3:24035791..24038107,2	K562	blood:
2	chr3:24033672..24036269-chr3:24038559..24040609,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10865791	0.82[CHB][hapmap]
rs11129130	0.82[CHB][hapmap]
rs13095392	0.82[JPT][hapmap]
rs1533140	0.83[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36083758	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4241522	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4578971	0.81[CHB][hapmap]
rs4589882	0.81[JPT][hapmap]
rs4858561	0.82[CHB][hapmap]
rs6550823	0.81[JPT][hapmap]
rs6550825	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6550826	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6550828	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs6779476	0.86[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs6800790	0.92[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7610892	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7610993	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7619870	0.83[ASN][1000 genomes]
rs7646930	0.82[CHB][hapmap]
rs9883101	0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24019600-24040800	Weak transcription	NHLF	lung
2	chr3:24030800-24040400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:24032200-24036200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:24032200-24036600	Enhancers	Fetal Stomach	stomach
5	chr3:24032600-24036200	Enhancers	Rectal Smooth Muscle	rectum
6	chr3:24032800-24036400	Enhancers	Colon Smooth Muscle	Colon
7	chr3:24032800-24036800	Enhancers	Fetal Heart	heart
8	chr3:24033200-24036200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:24033400-24036400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr3:24033600-24039000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:24033600-24040600	Weak transcription	Primary B cells from cord blood	blood
12	chr3:24033800-24036200	Enhancers	Brain Cingulate Gyrus	brain
13	chr3:24033800-24036600	Enhancers	Primary hematopoietic stem cells	blood
14	chr3:24033800-24040600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:24034000-24036200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:24034200-24036200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:24034200-24036800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:24034200-24039000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:24034600-24036400	Enhancers	Aorta	Aorta
20	chr3:24034600-24037200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:24034600-24040400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:24034800-24036200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr3:24035000-24036200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr3:24035000-24036200	Enhancers	Stomach Smooth Muscle	stomach
25	chr3:24035000-24036400	Enhancers	Fetal Muscle Leg	muscle
26	chr3:24035000-24036400	Enhancers	Right Atrium	heart
27	chr3:24035200-24040600	Weak transcription	Brain Anterior Caudate	brain
28	chr3:24035400-24036200	Enhancers	Adipose Nuclei	Adipose
29	chr3:24035400-24036200	Enhancers	Fetal Kidney	kidney
30	chr3:24035400-24037400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:24035600-24036600	Enhancers	Right Ventricle	heart
32	chr3:24035800-24037400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr3:24035800-24040400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:24035800-24040600	Weak transcription	Brain Angular Gyrus	brain
35	chr3:24036000-24036400	Enhancers	Fetal Muscle Trunk	muscle
36	chr3:24036000-24037200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:24036000-24037200	Weak transcription	Fetal Lung	lung
38	chr3:24036000-24038200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr3:24036000-24040400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr3:24036000-24040400	Weak transcription	HSMMtube	muscle
41	chr3:24036000-24040400	Weak transcription	NHDF-Ad	bronchial
42	chr3:24036000-24040600	Weak transcription	Brain Germinal Matrix	brain
43	chr3:24036000-24040600	Weak transcription	Brain Hippocampus Middle	brain
44	chr3:24036000-24040600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr3:24036000-24040600	Weak transcription	Brain Substantia Nigra	brain
46	chr3:24036000-24040800	Weak transcription	Ovary	ovary
47	chr3:24036000-24053400	Weak transcription	Psoas Muscle	Psoas

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