Variant report

Variant	rs1567847
Chromosome Location	chr15:33607444-33607445
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2670942	0.84[AMR][1000 genomes]
rs2676071	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1567847	RP11-489D6.2	cis	Muscle Skeletal	GTEx
rs1567847	RP11-489D6.2	cis	Artery Tibial	GTEx

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33602200-33608000	Active TSS	Brain Anterior Caudate	brain
2	chr15:33606600-33615600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:33607000-33608000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:33607200-33607800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr15:33607200-33608000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr15:33607200-33608000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:33607400-33607600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr15:33607400-33607600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr15:33607400-33607800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:33607400-33607800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr15:33607400-33608000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr15:33607400-33608000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
13	chr15:33607400-33608000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:33607400-33608000	Enhancers	Fetal Muscle Leg	muscle
15	chr15:33607400-33608200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:33607400-33608200	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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