Variant report

Variant	rs1568813
Chromosome Location	chr7:124206822-124206823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10243704	0.88[EUR][1000 genomes]
rs1073554	0.89[EUR][1000 genomes]
rs10954040	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1181796	0.90[EUR][1000 genomes]
rs12668485	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13239002	0.82[EUR][1000 genomes]
rs13239082	0.82[EUR][1000 genomes]
rs17147231	0.94[EUR][1000 genomes]
rs17147238	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1917352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1949834	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35936075	0.81[ASN][1000 genomes]
rs73219091	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791861	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124205000-124207200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr7:124205800-124207000	Enhancers	A549	lung
3	chr7:124206200-124207000	Enhancers	HMEC	breast
4	chr7:124206200-124207400	Enhancers	Hela-S3	cervix
5	chr7:124206400-124207000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:124206400-124207200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:124206400-124207200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:124206400-124207200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:124206400-124207200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:124206400-124207400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr7:124206600-124207000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr7:124206600-124207000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:124206600-124207000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:124206600-124207000	Enhancers	NHEK	skin
15	chr7:124206600-124207200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr7:124206600-124207200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:124206600-124207200	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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