Variant report

Variant	rs1568913
Chromosome Location	chr7:64292966-64292967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF138-2	chr7:64291829-64294059	NONHSAT121040

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10251093	0.83[AFR][1000 genomes]
rs10251096	0.83[AFR][1000 genomes]
rs10266341	0.83[AFR][1000 genomes]
rs10267569	0.83[AFR][1000 genomes]
rs10278712	0.83[AFR][1000 genomes]
rs11978309	0.80[AFR][1000 genomes]
rs12671429	0.80[AFR][1000 genomes]
rs13237903	0.83[AFR][1000 genomes]
rs1464925	0.83[AFR][1000 genomes]
rs1464926	0.80[AFR][1000 genomes]
rs1534149	1.00[AMR][1000 genomes]
rs1815165	0.80[AFR][1000 genomes]
rs1815168	0.83[AFR][1000 genomes]
rs1852205	0.83[AFR][1000 genomes]
rs1852206	0.83[AFR][1000 genomes]
rs1976918	0.83[AFR][1000 genomes]
rs1983466	0.86[AFR][1000 genomes]
rs2015938	0.83[AFR][1000 genomes]
rs2418463	0.80[AFR][1000 genomes]
rs2418464	0.83[AFR][1000 genomes]
rs2863928	0.92[AFR][1000 genomes]
rs4327747	0.80[AFR][1000 genomes]
rs4327748	0.80[AFR][1000 genomes]
rs4429995	0.83[AFR][1000 genomes]
rs4483043	0.80[AFR][1000 genomes]
rs4579410	0.80[AFR][1000 genomes]
rs4639394	0.83[AFR][1000 genomes]
rs4717218	0.83[AFR][1000 genomes]
rs4718126	0.80[AFR][1000 genomes]
rs4718128	0.80[AFR][1000 genomes]
rs4718132	0.83[AFR][1000 genomes]
rs4718133	0.83[AFR][1000 genomes]
rs4718137	0.83[AFR][1000 genomes]
rs6460188	0.80[AFR][1000 genomes]
rs6460191	0.80[AFR][1000 genomes]
rs6460193	0.80[AFR][1000 genomes]
rs6460194	0.80[AFR][1000 genomes]
rs6953310	0.83[AFR][1000 genomes]
rs6956506	0.80[AFR][1000 genomes]
rs6971507	0.83[AFR][1000 genomes]
rs6976060	0.83[AFR][1000 genomes]
rs7780295	1.00[AMR][1000 genomes]
rs7784671	1.00[AMR][1000 genomes]
rs7784682	1.00[AMR][1000 genomes]
rs7785568	0.80[AFR][1000 genomes]
rs7789308	0.80[AFR][1000 genomes]
rs7790245	0.83[AFR][1000 genomes]
rs7790631	1.00[AMR][1000 genomes]
rs7791652	0.83[AFR][1000 genomes]
rs7791673	1.00[AFR][1000 genomes]
rs7808059	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv888271	chr7:63961212-64295884	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
7	nsv888274	chr7:63990100-64331123	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
8	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
9	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	nsv888279	chr7:64094285-64331123	Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
11	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv888281	chr7:64250409-64295884	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv1033291	chr7:64273434-64406276	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
15	nsv508457	chr7:64286522-64391112	Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64255800-64293200	Weak transcription	NH-A	brain
2	chr7:64255800-64293400	Weak transcription	Psoas Muscle	Psoas
3	chr7:64256000-64294400	Weak transcription	Fetal Kidney	kidney
4	chr7:64261000-64295400	Weak transcription	Osteobl	bone
5	chr7:64268600-64296000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:64268800-64293400	Weak transcription	Brain Angular Gyrus	brain
7	chr7:64272800-64295200	Weak transcription	Fetal Thymus	thymus
8	chr7:64273400-64301400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:64275600-64294000	Weak transcription	Fetal Brain Male	brain
10	chr7:64278000-64293000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:64284600-64295800	Weak transcription	Brain Germinal Matrix	brain
12	chr7:64284800-64293000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:64284800-64293000	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:64284800-64294200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:64284800-64299800	Weak transcription	Pancreas	Pancrea
16	chr7:64285400-64296400	Weak transcription	Left Ventricle	heart
17	chr7:64286000-64293200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:64290200-64293000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:64290400-64293000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
20	chr7:64290400-64293400	ZNF genes & repeats	Primary T cells from cord blood	blood
21	chr7:64290800-64293400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr7:64291200-64293200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:64291200-64293400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:64291400-64293000	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:64291400-64293200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:64291400-64293400	Strong transcription	Adipose Nuclei	Adipose
27	chr7:64291400-64293600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
28	chr7:64291600-64294200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr7:64291600-64296000	Weak transcription	Colon Smooth Muscle	Colon
30	chr7:64291800-64293000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr7:64291800-64293200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
32	chr7:64291800-64293200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:64291800-64293600	Strong transcription	HSMM	muscle
34	chr7:64291800-64293800	Weak transcription	Fetal Intestine Large	intestine
35	chr7:64292000-64293600	ZNF genes & repeats	Primary B cells from cord blood	blood
36	chr7:64292200-64293000	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr7:64292200-64293200	Enhancers	Rectal Smooth Muscle	rectum
38	chr7:64292200-64293400	ZNF genes & repeats	Dnd41	blood
39	chr7:64292200-64294800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:64292400-64293200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:64292400-64293200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
42	chr7:64292400-64293200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
43	chr7:64292400-64293200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr7:64292400-64293800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr7:64292400-64294000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr7:64292400-64294600	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr7:64292600-64293800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr7:64292600-64294600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:64292600-64295200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:64292800-64293000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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