Variant report

Variant	rs1569022
Chromosome Location	chr5:60941007-60941008
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12654033	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57617820	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60928400-60954800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:60937600-60945400	Weak transcription	Brain Angular Gyrus	brain
3	chr5:60938400-60945400	Weak transcription	Brain Anterior Caudate	brain
4	chr5:60938400-60945400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:60939200-60941400	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:60939600-60941600	Strong transcription	Brain Substantia Nigra	brain
7	chr5:60940200-60941600	Strong transcription	Brain Cingulate Gyrus	brain
8	chr5:60941000-60941400	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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