Variant report

Variant	rs1569128
Chromosome Location	chr11:8132885-8132886
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10431029	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1055233	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10732512	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10734629	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10743051	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10743052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10769872	0.91[CEU][hapmap];0.87[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11041767	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12146654	0.83[CEU][hapmap]
rs2049684	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2141321	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2272383	0.88[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4758042	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6578931	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6578932	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6578934	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6578935	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7119468	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7358396	0.85[CEU][hapmap]
rs7482611	0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7937959	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7951233	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829170	chr11:8068594-8216369	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv428249	chr11:8068594-8216369	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8114400-8133600	Weak transcription	Liver	Liver
2	chr11:8117000-8157600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr11:8120600-8148400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:8120800-8133200	Weak transcription	NHDF-Ad	bronchial
5	chr11:8124000-8135600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:8124000-8139600	Weak transcription	Spleen	Spleen
7	chr11:8124200-8136400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:8124400-8135400	Weak transcription	Gastric	stomach
9	chr11:8124600-8133800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:8124800-8136000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:8126200-8133400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:8126400-8160600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:8126800-8135600	Strong transcription	Primary B cells from peripheral blood	blood
14	chr11:8128200-8133600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr11:8128400-8133600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:8128400-8135000	Weak transcription	Left Ventricle	heart
17	chr11:8128800-8162600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:8129400-8133600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:8129400-8134600	Weak transcription	Right Ventricle	heart
20	chr11:8129800-8133600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:8130200-8133400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr11:8131400-8133600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:8132000-8133000	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:8132000-8133000	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr11:8132000-8133600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:8132000-8134200	Enhancers	Fetal Stomach	stomach
27	chr11:8132200-8133000	Enhancers	Fetal Brain Female	brain
28	chr11:8132200-8133800	Enhancers	Fetal Lung	lung
29	chr11:8132200-8134800	Weak transcription	Right Atrium	heart
30	chr11:8132400-8133000	Enhancers	Colon Smooth Muscle	Colon
31	chr11:8132400-8133200	Enhancers	Brain Hippocampus Middle	brain
32	chr11:8132400-8133600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:8132400-8134000	Weak transcription	Adipose Nuclei	Adipose
34	chr11:8132400-8134200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:8132400-8134200	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr11:8132400-8134200	Enhancers	Fetal Brain Male	brain
37	chr11:8132400-8134600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:8132400-8134600	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr11:8132400-8135000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:8132400-8135600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:8132400-8135800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr11:8132400-8138200	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:8132400-8148200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:8132400-8154600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr11:8132400-8157200	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:8132400-8157200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:8132400-8159600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr11:8132600-8133000	Enhancers	Stomach Smooth Muscle	stomach
49	chr11:8132600-8133200	Weak transcription	Brain Anterior Caudate	brain
50	chr11:8132600-8134800	Weak transcription	Aorta	Aorta

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