Variant report

Variant	rs1569815
Chromosome Location	chr20:15618080-15618081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1345367	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1362508	0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap];0.90[ASN][1000 genomes]
rs1362509	0.90[ASN][1000 genomes]
rs1569813	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1569814	0.95[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs200774	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs200775	0.94[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs459716	0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs4813186	0.90[CHB][hapmap];0.88[CHD][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6135474	0.84[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2751909	chr20:15489871-15656007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15616600-15619200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr20:15616800-15619400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr20:15616800-15619800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr20:15617000-15618400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr20:15617000-15619600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr20:15617000-15619800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr20:15617000-15619800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr20:15617000-15620400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:15617200-15618600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr20:15617200-15619800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr20:15617200-15619800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr20:15617400-15618400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr20:15617400-15619200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr20:15617600-15619200	Enhancers	Fetal Lung	lung
15	chr20:15617600-15629000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr20:15617800-15618400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr20:15617800-15619000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr20:15618000-15619000	Enhancers	Brain Cingulate Gyrus	brain
19	chr20:15618000-15619000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr20:15618000-15619000	Enhancers	Stomach Smooth Muscle	stomach
21	chr20:15618000-15619400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr20:15618000-15619400	Enhancers	Colon Smooth Muscle	Colon
23	chr20:15618000-15619800	Enhancers	Fetal Heart	heart

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