Variant report

Variant	rs1570596
Chromosome Location	chr1:58259509-58259510
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12034235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1408141	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1570595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886142	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1886143	0.91[ASN][1000 genomes]
rs6698015	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs852749	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852764	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852765	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852766	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852767	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852773	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852776	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852777	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852780	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852781	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs852783	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs852786	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs927613	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829937	chr1:58258288-58406506	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58257600-58262400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr1:58258000-58262400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:58259000-58259800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:58259400-58259800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links