Variant report

Variant	rs1570827
Chromosome Location	chr1:76817786-76817787
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11162128	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6685141	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1006776	chr1:76777323-76899975	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014231	chr1:76781140-76880630	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76809400-76818800	Weak transcription	Gastric	stomach
2	chr1:76811400-76822800	Weak transcription	Fetal Stomach	stomach
3	chr1:76817200-76817800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:76817200-76818000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr1:76817400-76817800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:76817400-76818000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:76817400-76818000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr1:76817400-76818000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:76817400-76818200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:76817600-76818000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:76817600-76818000	Enhancers	Brain Substantia Nigra	brain
12	chr1:76817600-76818200	Enhancers	Brain Cingulate Gyrus	brain
13	chr1:76817600-76818400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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