The 2.0 version of rSNPBase

Variant report

Variant rs1570988
Chromosome Location chr6:12049059-12049060
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:12018600-12049400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr6:12018600-12052000 Weak transcription Thymus Thymus
3 chr6:12034800-12061000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr6:12035000-12049800 Weak transcription Fetal Adrenal Gland Adrenal Gland
5 chr6:12035200-12052200 Weak transcription Stomach Mucosa stomach
6 chr6:12040200-12060800 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr6:12040400-12049400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr6:12040400-12050200 Weak transcription iPS-20b Cell Line embryonic stem cell
9 chr6:12040400-12058800 Weak transcription Fetal Muscle Leg muscle
10 chr6:12040400-12059600 Weak transcription iPS-18 Cell Line embryonic stem cell
11 chr6:12041000-12060800 Weak transcription HUES64 Cell Line embryonic stem cell
12 chr6:12041400-12052200 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr6:12042200-12050000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr6:12045200-12049200 Weak transcription Fetal Brain Female brain
15 chr6:12045200-12049400 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr6:12045200-12052000 Weak transcription Primary hematopoietic stem cells blood
17 chr6:12045400-12049400 Weak transcription HepG2 liver
18 chr6:12045400-12050000 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr6:12045400-12051400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
20 chr6:12045400-12052600 Weak transcription Duodenum Mucosa Duodenum
21 chr6:12045600-12049200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr6:12045600-12049400 Weak transcription Ovary ovary
23 chr6:12045600-12049600 Weak transcription Adipose Nuclei Adipose
24 chr6:12045600-12050800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr6:12045600-12051400 Weak transcription Primary T killer memory cells from peripheral blood blood
26 chr6:12045600-12051400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
27 chr6:12045600-12056000 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr6:12045600-12058200 Weak transcription Small Intestine intestine
29 chr6:12045600-12058600 Weak transcription A549 lung
30 chr6:12045600-12058800 Weak transcription Skeletal Muscle Female skeletal muscle
31 chr6:12045600-12059800 Weak transcription Left Ventricle heart
32 chr6:12045600-12059800 Weak transcription Psoas Muscle Psoas
33 chr6:12045600-12061000 Weak transcription Fetal Thymus thymus
34 chr6:12045600-12061000 Weak transcription Pancreas Pancrea
35 chr6:12045600-12061200 Weak transcription Gastric stomach
36 chr6:12045600-12065800 Weak transcription Aorta Aorta
37 chr6:12045600-12066200 Weak transcription HSMM muscle
38 chr6:12045600-12066400 Weak transcription Hela-S3 cervix
39 chr6:12045800-12049200 Weak transcription HMEC breast
40 chr6:12045800-12049400 Weak transcription Primary T cells fromperipheralblood blood
41 chr6:12045800-12049600 Weak transcription Right Atrium heart
42 chr6:12045800-12051000 Weak transcription Primary T helper naive cells from peripheral blood blood
43 chr6:12045800-12051200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
44 chr6:12045800-12052200 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr6:12045800-12052400 Weak transcription Stomach Smooth Muscle stomach
46 chr6:12045800-12066000 Weak transcription HUVEC blood vessel
47 chr6:12046000-12049200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr6:12046000-12049200 Weak transcription Osteobl bone
49 chr6:12046000-12053000 Weak transcription NHDF-Ad bronchial
50 chr6:12046000-12060800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015