Variant report

Variant	rs1571016
Chromosome Location	chr10:90792759-90792760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:90790531..90793137-chr10:90969474..90972044,2	MCF-7	breast:
2	chr10:90791836..90792785-chr10:90972789..90973327,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAS-2	chr10:90792592-90792766	XLOC_008549
2	lnc-FAS-2	chr10:90787438-90793194	NONHSAT015495

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10788629	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10887888	0.94[EUR][1000 genomes]
rs11202939	0.94[EUR][1000 genomes]
rs1578982	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1937335	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1937342	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1937343	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2105436	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4934437	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6586170	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7072348	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7082723	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7898005	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7916326	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:90772400-90795000	Weak transcription	Placenta	Placenta
3	chr10:90772600-90795800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:90788400-90792800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:90788800-90792800	Enhancers	NHDF-Ad	bronchial
7	chr10:90789400-90792800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:90789400-90793000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:90789400-90793000	Enhancers	Osteobl	bone
10	chr10:90789600-90792800	Enhancers	Primary B cells from cord blood	blood
11	chr10:90789800-90793000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr10:90789800-90802000	Weak transcription	Ovary	ovary
13	chr10:90790000-90802800	Weak transcription	Fetal Intestine Small	intestine
14	chr10:90790400-90792800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr10:90790600-90792800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr10:90790600-90792800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:90790800-90792800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:90791200-90792800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:90791200-90792800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:90791200-90793000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr10:90791200-90793200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr10:90791400-90792800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr10:90791400-90792800	Enhancers	H9 Cell Line	embryonic stem cell
24	chr10:90791400-90792800	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr10:90791400-90792800	Enhancers	Stomach Mucosa	stomach
26	chr10:90791400-90792800	Enhancers	Spleen	Spleen
27	chr10:90791400-90792800	Enhancers	NHLF	lung
28	chr10:90791600-90792800	Enhancers	Primary hematopoietic stem cells	blood
29	chr10:90791600-90792800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr10:90791600-90792800	Enhancers	Fetal Lung	lung
31	chr10:90791600-90792800	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr10:90791600-90793000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:90791600-90793000	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr10:90791800-90792800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:90791800-90792800	Enhancers	Brain Anterior Caudate	brain
36	chr10:90791800-90792800	Enhancers	Esophagus	oesophagus
37	chr10:90791800-90792800	Enhancers	Sigmoid Colon	Sigmoid Colon
38	chr10:90791800-90792800	Flanking Active TSS	Hela-S3	cervix
39	chr10:90791800-90792800	Enhancers	HSMM	muscle
40	chr10:90791800-90793000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr10:90792000-90792800	Enhancers	Colonic Mucosa	Colon
42	chr10:90792000-90792800	Flanking Active TSS	HMEC	breast
43	chr10:90792000-90792800	Flanking Active TSS	NHEK	skin
44	chr10:90792000-90793800	Weak transcription	Left Ventricle	heart
45	chr10:90792000-90801800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr10:90792200-90792800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:90792200-90792800	Flanking Active TSS	A549	lung
48	chr10:90792200-90807200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr10:90792400-90792800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr10:90792400-90792800	Enhancers	HUES48 Cell Line	embryonic stem cell

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