Variant report

Variant	rs1572897
Chromosome Location	chr6:70526059-70526060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12530225	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13197316	0.90[ASN][1000 genomes]
rs2502594	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2502595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70521800-70526800	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:70521800-70526800	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr6:70522800-70527000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:70523200-70526800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:70523400-70528200	Weak transcription	Pancreas	Pancrea
6	chr6:70524000-70526200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:70524200-70526200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:70524200-70526600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:70524600-70526800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:70524600-70526800	Enhancers	Fetal Thymus	thymus
11	chr6:70524600-70527000	Flanking Active TSS	GM12878-XiMat	blood
12	chr6:70524800-70526400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:70525000-70526600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:70525000-70526800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr6:70525200-70526200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:70525200-70526200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:70525200-70526200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:70525200-70526400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:70525200-70526400	Enhancers	Thymus	Thymus
20	chr6:70525200-70526600	Weak transcription	K562	blood
21	chr6:70525200-70526800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr6:70525400-70526400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:70525400-70526400	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr6:70525400-70526600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
25	chr6:70525600-70526400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
26	chr6:70525600-70526600	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr6:70525800-70526200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:70525800-70526200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:70525800-70526200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:70525800-70526200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:70525800-70526400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:70525800-70526400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
33	chr6:70525800-70526400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr6:70525800-70526400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr6:70525800-70526600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:70525800-70526800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr6:70525800-70526800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:70526000-70526200	Enhancers	H9 Cell Line	embryonic stem cell
39	chr6:70526000-70526400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:70526000-70526400	Flanking Active TSS	Primary T cells from cord blood	blood
41	chr6:70526000-70526400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr6:70526000-70526800	Enhancers	Primary hematopoietic stem cells	blood
43	chr6:70526000-70526800	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr6:70526000-70527000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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