Variant report

Variant	rs1572956
Chromosome Location	chr6:119926000-119926001
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1021700	0.82[EUR][1000 genomes]
rs10872182	0.83[EUR][1000 genomes]
rs12193404	0.85[EUR][1000 genomes]
rs12212125	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs13201219	0.85[EUR][1000 genomes]
rs13210736	0.81[EUR][1000 genomes]
rs2064570	0.83[ASN][1000 genomes]
rs2066283	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4945646	0.85[EUR][1000 genomes]
rs4946432	0.85[EUR][1000 genomes]
rs6910329	0.85[EUR][1000 genomes]
rs6912954	0.85[EUR][1000 genomes]
rs7773889	0.85[EUR][1000 genomes]
rs9372543	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9374808	0.85[EUR][1000 genomes]
rs9398518	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9401157	0.85[EUR][1000 genomes]
rs9401159	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1027370	chr6:119869409-120056608	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538431	chr6:119869409-120056608	Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119924800-119926000	Weak transcription	NHLF	lung
2	chr6:119924800-119928000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:119924800-119931200	Weak transcription	NHDF-Ad	bronchial
4	chr6:119925000-119931200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:119925600-119932000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:119925800-119930200	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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