Variant report

Variant	rs1573001
Chromosome Location	chr1:102830625-102830626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OLFM3-1	chr1:102830569-102830793	XLOC_000943

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11809901	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1241416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1341907	1.00[ASN][1000 genomes]
rs1341908	1.00[ASN][1000 genomes]
rs1573002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2376028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv869940	chr1:102641285-102861815	Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv997714	chr1:102646550-102852838	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv527282	chr1:102647938-102995218	Enhancers ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv527939	chr1:102647938-102995218	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1000003	chr1:102652777-102843624	Enhancers ZNF genes & repeats Active TSS Weak transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1001712	chr1:102652777-102850380	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1013397	chr1:102652777-102852838	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv871874	chr1:102653180-102865643	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv2750795	chr1:102655684-102849788	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv998426	chr1:102655684-102850380	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1012765	chr1:102655684-102852838	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1006160	chr1:102656181-102841915	Enhancers ZNF genes & repeats Genic enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1003711	chr1:102656181-102843624	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv998908	chr1:102656181-102850380	Enhancers ZNF genes & repeats Genic enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1014058	chr1:102656181-102852838	Enhancers ZNF genes & repeats Active TSS Weak transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv916124	chr1:102656635-102849833	Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv1002440	chr1:102657632-102852838	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv1007166	chr1:102657632-102858846	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	esv2763582	chr1:102657644-102852850	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	esv2750796	chr1:102657979-102849979	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
22	esv2756328	chr1:102658174-102849788	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv1010954	chr1:102659852-102865075	Enhancers ZNF genes & repeats Genic enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv535036	chr1:102659852-102865075	Enhancers ZNF genes & repeats Genic enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
25	nsv546902	chr1:102661680-102834095	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
26	nsv546903	chr1:102661680-102843543	ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv546906	chr1:102667388-102843543	Genic enhancers Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv546908	chr1:102673499-102858846	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
29	nsv546909	chr1:102684733-102846147	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
30	esv3446703	chr1:102700221-103125526	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
31	nsv870749	chr1:102729275-103057270	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
32	nsv871437	chr1:102791988-102834095	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	nsv546914	chr1:102794417-102834095	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
34	nsv870562	chr1:102799057-102834095	Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	nsv871786	chr1:102799057-102865643	Enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
36	nsv870925	chr1:102799057-102916914	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
37	nsv830859	chr1:102805213-102987654	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
38	nsv871924	chr1:102819484-102916914	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
39	nsv947502	chr1:102826979-102914236	Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
40	nsv436936	chr1:102827023-102830625	Enhancers	lncRNA	n/a	inside rSNPs	n/a
41	nsv436947	chr1:102827023-102830625	Enhancers	lncRNA	n/a	inside rSNPs	n/a
42	nsv437230	chr1:102827023-102830625	Enhancers	lncRNA	n/a	inside rSNPs	n/a
43	nsv437231	chr1:102827023-102830625	Enhancers	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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