Variant report

Variant	rs1573320
Chromosome Location	chr18:8959613-8959614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:8957060..8959618-chr18:8965152..8966883,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs8091119	0.97[ASN][1000 genomes]
rs8094022	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv870110	chr18:8958418-9075363	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8949800-8962200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:8952200-8960400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr18:8952400-8961000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr18:8953600-8960600	Weak transcription	Osteobl	bone
5	chr18:8957200-8960800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr18:8957600-8959800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr18:8958000-8959800	Enhancers	Stomach Mucosa	stomach
8	chr18:8958200-8962400	Weak transcription	Fetal Muscle Leg	muscle
9	chr18:8958600-8960200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr18:8958800-8960000	Enhancers	K562	blood
11	chr18:8958800-8960200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr18:8958800-8960200	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr18:8958800-8960200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr18:8959000-8959800	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr18:8959000-8960200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr18:8959000-8960200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr18:8959000-8960200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr18:8959000-8960200	Enhancers	Duodenum Mucosa	Duodenum
19	chr18:8959000-8960600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr18:8959000-8961000	Enhancers	Liver	Liver
21	chr18:8959200-8961600	Weak transcription	Gastric	stomach
22	chr18:8959400-8959800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr18:8959400-8960200	Enhancers	Fetal Heart	heart
24	chr18:8959400-8960200	Enhancers	Placenta Amnion	Placenta Amnion
25	chr18:8959400-8961600	Enhancers	Fetal Intestine Large	intestine
26	chr18:8959400-8969000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr18:8959600-8959800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr18:8959600-8959800	Enhancers	NHLF	lung
29	chr18:8959600-8960000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr18:8959600-8960000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr18:8959600-8960000	Flanking Active TSS	A549	lung
32	chr18:8959600-8960200	Enhancers	H9 Cell Line	embryonic stem cell
33	chr18:8959600-8960200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr18:8959600-8960200	Flanking Active TSS	HepG2	liver
35	chr18:8959600-8960400	Enhancers	Pancreas	Pancrea
36	chr18:8959600-8961000	Enhancers	Fetal Intestine Small	intestine

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