Variant report

Variant	rs157386
Chromosome Location	chr17:19699121-19699122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs281357	1.00[LWK][hapmap]
rs4925043	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1061489	chr17:19654704-19705026	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv482398	chr17:19673458-19808039	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1057469	chr17:19696714-19787062	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19670200-19699400	Weak transcription	Psoas Muscle	Psoas
2	chr17:19673800-19769800	Weak transcription	NH-A	brain
3	chr17:19674000-19699200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr17:19674000-19699200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr17:19676800-19699400	Weak transcription	Thymus	Thymus
6	chr17:19677800-19700000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr17:19678200-19712000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:19678800-19699200	Weak transcription	Colonic Mucosa	Colon
9	chr17:19679200-19699400	Strong transcription	Fetal Stomach	stomach
10	chr17:19679600-19700000	Weak transcription	HMEC	breast
11	chr17:19679600-19701000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr17:19680000-19726800	Weak transcription	NHLF	lung
13	chr17:19682200-19699400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr17:19682400-19699400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr17:19690200-19709000	Strong transcription	Adipose Nuclei	Adipose
16	chr17:19690600-19699200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr17:19690800-19699800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr17:19690800-19707600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr17:19691000-19699800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr17:19691000-19705200	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr17:19691200-19699200	Weak transcription	Stomach Mucosa	stomach
22	chr17:19691600-19699400	Weak transcription	Spleen	Spleen
23	chr17:19691800-19702000	Strong transcription	Brain Hippocampus Middle	brain
24	chr17:19692600-19699400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr17:19692600-19699400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr17:19692600-19699400	Weak transcription	Esophagus	oesophagus
27	chr17:19692600-19699400	Weak transcription	HSMMtube	muscle
28	chr17:19692800-19699400	Weak transcription	Colon Smooth Muscle	Colon
29	chr17:19692800-19699400	Weak transcription	Gastric	stomach
30	chr17:19692800-19699400	Weak transcription	Pancreas	Pancrea
31	chr17:19693000-19699400	Weak transcription	NHEK	skin
32	chr17:19693000-19702000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr17:19693800-19699200	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr17:19694400-19699400	Strong transcription	Left Ventricle	heart
35	chr17:19694600-19701000	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr17:19695200-19699200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr17:19695400-19700000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr17:19695400-19702000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr17:19695600-19701200	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr17:19695600-19701800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:19695600-19701800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr17:19695600-19701800	Strong transcription	Stomach Smooth Muscle	stomach
43	chr17:19695600-19702000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr17:19695800-19702000	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr17:19696000-19701000	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
46	chr17:19696000-19701400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr17:19696000-19702000	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr17:19696200-19699400	Strong transcription	Placenta	Placenta
49	chr17:19696200-19699400	Strong transcription	Ovary	ovary
50	chr17:19696200-19704200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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