Variant report

Variant	rs1576118
Chromosome Location	chr1:70417190-70417191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:70414870..70417242-chr1:70419207..70421532,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1015819	0.97[ASN][1000 genomes]
rs10789305	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10889864	0.97[ASN][1000 genomes]
rs11209581	0.97[ASN][1000 genomes]
rs11209582	0.97[ASN][1000 genomes]
rs11209583	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12022309	0.97[ASN][1000 genomes]
rs12022612	0.97[ASN][1000 genomes]
rs12023122	0.97[ASN][1000 genomes]
rs12023579	0.97[ASN][1000 genomes]
rs12023932	0.97[ASN][1000 genomes]
rs12024182	0.97[ASN][1000 genomes]
rs12024249	0.84[ASN][1000 genomes]
rs12024298	0.97[ASN][1000 genomes]
rs12024870	0.97[ASN][1000 genomes]
rs12024978	0.97[ASN][1000 genomes]
rs12026220	0.97[ASN][1000 genomes]
rs12026306	0.97[ASN][1000 genomes]
rs12026558	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12027422	0.97[ASN][1000 genomes]
rs12027457	0.97[ASN][1000 genomes]
rs12028648	0.97[ASN][1000 genomes]
rs12030588	0.92[ASN][1000 genomes]
rs12030680	0.97[ASN][1000 genomes]
rs12030875	0.97[ASN][1000 genomes]
rs12031434	0.93[ASN][1000 genomes]
rs12031770	0.97[ASN][1000 genomes]
rs12031827	0.97[ASN][1000 genomes]
rs12032155	0.97[ASN][1000 genomes]
rs12032200	0.97[ASN][1000 genomes]
rs12032252	0.97[ASN][1000 genomes]
rs12032818	0.97[ASN][1000 genomes]
rs12032893	0.97[ASN][1000 genomes]
rs12033282	0.97[ASN][1000 genomes]
rs12033308	0.97[ASN][1000 genomes]
rs12033380	0.97[ASN][1000 genomes]
rs12034575	0.95[ASN][1000 genomes]
rs12035355	0.97[ASN][1000 genomes]
rs12035691	0.97[ASN][1000 genomes]
rs12035813	0.97[ASN][1000 genomes]
rs12035905	0.97[ASN][1000 genomes]
rs12036676	0.97[ASN][1000 genomes]
rs12036805	0.97[ASN][1000 genomes]
rs12036806	0.97[ASN][1000 genomes]
rs12038529	0.97[ASN][1000 genomes]
rs12040135	0.97[ASN][1000 genomes]
rs12040896	0.97[ASN][1000 genomes]
rs12043804	0.97[ASN][1000 genomes]
rs12043886	0.97[ASN][1000 genomes]
rs12043911	0.97[ASN][1000 genomes]
rs12045140	0.97[ASN][1000 genomes]
rs12045530	0.97[ASN][1000 genomes]
rs12046022	0.97[ASN][1000 genomes]
rs12046847	0.97[ASN][1000 genomes]
rs12047486	0.97[ASN][1000 genomes]
rs12047501	0.97[ASN][1000 genomes]
rs12047627	0.97[ASN][1000 genomes]
rs12048343	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12048494	0.97[ASN][1000 genomes]
rs12048932	0.97[ASN][1000 genomes]
rs1327880	1.00[ASN][1000 genomes]
rs1327881	0.97[ASN][1000 genomes]
rs1410251	0.97[ASN][1000 genomes]
rs1410252	0.97[ASN][1000 genomes]
rs1576119	1.00[ASN][1000 genomes]
rs17446829	0.97[ASN][1000 genomes]
rs17505551	0.97[ASN][1000 genomes]
rs17505598	0.97[ASN][1000 genomes]
rs1854221	1.00[ASN][1000 genomes]
rs56106183	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56920619	0.97[ASN][1000 genomes]
rs57363111	0.97[ASN][1000 genomes]
rs58259872	0.97[ASN][1000 genomes]
rs7556475	0.97[ASN][1000 genomes]
rs8179494	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428466	chr1:70306638-70455357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv947492	chr1:70414280-70420191	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70402000-70419800	Weak transcription	Fetal Brain Male	brain

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