Variant report

Variant	rs1576797
Chromosome Location	chr9:9489609-9489610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10117271	0.90[JPT][hapmap]
rs10759074	0.81[JPT][hapmap]
rs10759075	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs10816128	0.80[JPT][hapmap]
rs10816129	0.85[JPT][hapmap]
rs10816133	0.80[JPT][hapmap]
rs10816138	0.84[JPT][hapmap]
rs10816139	0.84[JPT][hapmap]
rs10816141	0.95[JPT][hapmap]
rs10977764	0.81[CEU][hapmap]
rs10977783	0.85[JPT][hapmap]
rs10977800	0.84[JPT][hapmap]
rs1120438	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs1332192	1.00[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs1332194	0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs1332195	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1332196	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs1332213	0.81[JPT][hapmap]
rs1332807	0.81[JPT][hapmap]
rs1333107	0.81[JPT][hapmap]
rs1333108	0.81[JPT][hapmap]
rs1576794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1576798	0.90[JPT][hapmap]
rs16929560	0.95[JPT][hapmap]
rs17831559	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs2026984	0.90[JPT][hapmap]
rs2382018	0.92[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4237177	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4451355	0.90[JPT][hapmap]
rs4484751	0.90[JPT][hapmap]
rs4742602	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4742603	0.88[ASN][1000 genomes]
rs7044905	0.84[ASN][1000 genomes]
rs7465855	0.81[JPT][hapmap]
rs7468723	0.80[JPT][hapmap]
rs867979	0.86[ASN][1000 genomes]
rs944641	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs955474	0.83[CEU][hapmap];0.81[JPT][hapmap]
rs987353	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1016302	chr9:9355676-9549587	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv539982	chr9:9355676-9549587	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv613308	chr9:9409606-9750139	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv528425	chr9:9437674-9556992	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1034257	chr9:9444744-9526138	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv1016118	chr9:9444744-9582169	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv1020932	chr9:9481247-9534062	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9488800-9490000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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