Variant report

Variant	rs1576979
Chromosome Location	chr1:170461589-170461590
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10733056	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10753814	0.86[AFR][1000 genomes]
rs10753815	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs10800527	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs10919425	0.83[AFR][1000 genomes]
rs12116909	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs1333133	0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs1333142	1.00[YRI][hapmap]
rs1333150	0.91[AFR][1000 genomes]
rs1333155	0.85[AFR][1000 genomes]
rs1333156	0.85[AFR][1000 genomes]
rs1412892	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs1412893	0.89[AFR][1000 genomes]
rs1412895	0.85[AFR][1000 genomes]
rs1537390	1.00[YRI][hapmap]
rs1537395	0.82[YRI][hapmap]
rs1537397	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs1576980	0.83[AFR][1000 genomes]
rs1855221	0.85[AFR][1000 genomes]
rs1928716	1.00[YRI][hapmap]
rs1930632	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2104918	0.82[AFR][1000 genomes]
rs2150029	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs2225322	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs2421325	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs2901401	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs3980839	0.91[AFR][1000 genomes]
rs4325194	0.89[AFR][1000 genomes]
rs4402174	0.85[AFR][1000 genomes]
rs4415629	0.89[AFR][1000 genomes]
rs4656769	0.81[AFR][1000 genomes]
rs4656775	0.87[AFR][1000 genomes]
rs4656777	0.87[AFR][1000 genomes]
rs4656779	0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs4656783	0.86[AFR][1000 genomes]
rs6427260	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6427261	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6657164	0.85[AFR][1000 genomes]
rs6660575	0.84[AFR][1000 genomes]
rs6664037	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs6667304	0.91[AFR][1000 genomes]
rs6669308	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6670724	0.83[AFR][1000 genomes]
rs6671312	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6676081	0.84[AFR][1000 genomes]
rs6693763	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6699057	0.83[AFR][1000 genomes]
rs6701218	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs7531125	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs7538125	0.85[AFR][1000 genomes]
rs7548443	0.85[AFR][1000 genomes]
rs7553254	1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872543	chr1:170171083-170674903	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv533915	chr1:170258766-170725296	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170457200-170462800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:170460600-170464400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:170461000-170462600	Weak transcription	Dnd41	blood
4	chr1:170461000-170463200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:170461000-170463400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:170461000-170463400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:170461000-170463600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:170461000-170464000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:170461200-170463000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr1:170461200-170463000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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