Variant report

Variant	rs1579659
Chromosome Location	chr4:94869985-94869986
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10006063	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017239	0.98[ASN][1000 genomes]
rs10017390	0.98[ASN][1000 genomes]
rs13107950	0.85[ASN][1000 genomes]
rs13126492	0.85[ASN][1000 genomes]
rs13143440	0.80[ASN][1000 genomes]
rs1370812	0.98[ASN][1000 genomes]
rs1583660	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1595502	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17365288	0.87[ASN][1000 genomes]
rs1821887	0.80[ASN][1000 genomes]
rs1837211	0.83[EUR][1000 genomes]
rs2033781	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2578126	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2578132	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2578133	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2578134	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2618760	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2618761	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35992541	0.80[ASN][1000 genomes]
rs5021131	0.80[ASN][1000 genomes]
rs7692039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9684477	0.80[ASN][1000 genomes]
rs9684497	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1792557	chr4:94738158-95027272	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv830010	chr4:94830239-95029403	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1002654	chr4:94867639-95030074	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv537187	chr4:94867639-95030074	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94867800-94870600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:94869000-94870200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:94869000-94870600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:94869400-94870400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:94869600-94870600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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