Variant report

Variant	rs1580199
Chromosome Location	chr6:77480725-77480726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr6:77480689-77481304	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
ENSG00000271945	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1017707	0.83[ASN][1000 genomes]
rs1017708	0.83[ASN][1000 genomes]
rs1379667	0.83[ASN][1000 genomes]
rs1457948	0.83[ASN][1000 genomes]
rs1457950	0.83[ASN][1000 genomes]
rs1457952	0.83[ASN][1000 genomes]
rs1598867	0.83[ASN][1000 genomes]
rs2061648	0.83[ASN][1000 genomes]
rs2125215	0.83[ASN][1000 genomes]
rs4708284	0.83[ASN][1000 genomes]
rs6453936	0.83[ASN][1000 genomes]
rs6900429	0.83[ASN][1000 genomes]
rs6901108	0.83[ASN][1000 genomes]
rs7739924	0.83[ASN][1000 genomes]
rs7740357	0.83[ASN][1000 genomes]
rs7744044	0.83[ASN][1000 genomes]
rs9447796	0.83[ASN][1000 genomes]
rs9447797	0.83[ASN][1000 genomes]
rs969251	0.83[ASN][1000 genomes]
rs987007	0.83[ASN][1000 genomes]
rs987008	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019520	chr6:77355212-77875164	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538321	chr6:77355212-77875164	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv886217	chr6:77415155-77490717	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886218	chr6:77415155-77500526	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv886220	chr6:77415155-77505717	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv886219	chr6:77415155-77515516	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3415838	chr6:77452282-77485905	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3448552	chr6:77461282-77485905	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:77470600-77484600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:77478000-77481400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:77479200-77480800	Weak transcription	Left Ventricle	heart
4	chr6:77479200-77481200	Weak transcription	Right Ventricle	heart
5	chr6:77479200-77483400	Weak transcription	Spleen	Spleen
6	chr6:77479800-77484200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:77480000-77480800	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:77480000-77481400	Enhancers	Stomach Mucosa	stomach
9	chr6:77480200-77481000	Enhancers	Ovary	ovary
10	chr6:77480400-77481800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:77480400-77482200	Enhancers	Fetal Heart	heart
12	chr6:77480600-77481200	Enhancers	HUVEC	blood vessel
13	chr6:77480600-77483000	Enhancers	Placenta	Placenta

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