Variant report

Variant	rs1581694
Chromosome Location	chr7:21966979-21966980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10447610	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12154480	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4442026	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7786788	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7787345	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7791077	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9655217	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9692388	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9692398	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1027453	chr7:21918474-21982448	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv275068	chr7:21966107-21980773	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21938600-21984000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:21948800-21981000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:21951600-21982600	Weak transcription	HSMM	muscle
4	chr7:21952600-21977400	Weak transcription	NHDF-Ad	bronchial
5	chr7:21954800-21970400	Weak transcription	Liver	Liver
6	chr7:21954800-21971800	Weak transcription	Gastric	stomach
7	chr7:21955000-21967400	Weak transcription	Fetal Intestine Small	intestine
8	chr7:21955000-21969800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr7:21955000-21979000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:21955000-21979200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:21955000-21979600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr7:21955000-21981000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:21955200-21967800	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr7:21956000-21976400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:21956000-21981000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr7:21956200-21967200	Weak transcription	Thymus	Thymus
17	chr7:21956200-21967400	Weak transcription	Fetal Stomach	stomach
18	chr7:21956200-21976800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:21956400-21980200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:21956600-21967400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:21956600-21970000	Weak transcription	Fetal Thymus	thymus
22	chr7:21956600-21983600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:21959800-21967000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr7:21959800-21973800	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr7:21961200-21967600	Weak transcription	Right Ventricle	heart
26	chr7:21961400-21967200	Weak transcription	Primary T cells from cord blood	blood
27	chr7:21962200-21967200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:21963200-21967400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr7:21963400-21967400	Weak transcription	Left Ventricle	heart
30	chr7:21963400-21979200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:21963600-21967400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:21963600-21968000	Weak transcription	Psoas Muscle	Psoas
33	chr7:21963600-21983600	Weak transcription	Ovary	ovary
34	chr7:21964000-21979200	Weak transcription	Hela-S3	cervix
35	chr7:21964200-21967200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr7:21964200-21967200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr7:21964200-21977400	Weak transcription	HUVEC	blood vessel
38	chr7:21964800-21967000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr7:21965000-21967000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr7:21965000-21967200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr7:21965000-21967200	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr7:21965000-21967200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr7:21965000-21967400	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr7:21965000-21973600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr7:21965000-21976800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr7:21965200-21967200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr7:21965200-21976400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr7:21965200-21982400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr7:21965400-21967600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr7:21966200-21967600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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